Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,127,833 – 20,127,945 |
Length | 112 |
Max. P | 0.551730 |
Location | 20,127,833 – 20,127,945 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.98 |
Mean single sequence MFE | -32.68 |
Consensus MFE | -17.74 |
Energy contribution | -19.34 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.15 |
Mean z-score | -2.12 |
Structure conservation index | 0.54 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551730 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20127833 112 + 22407834 CUUCCGCUGCGCUCAAUUCC-------CAAUGUUGCCAAGUGGCAGUCAUUGGCUUUUGCAGUGGCUUCUCGAUUUUUCGGAUAGUGCUUAAACAUUUUCAG-AUUUACUGGCAGCAGAA ..((.(((((...(((...(-------((((((((((....))))).))))))...)))((((((..((((((....)))((.((((......)))).))))-).))))))))))).)). ( -36.40) >DroSec_CAF1 39201 111 + 1 CUUCCGCUGCGCUCAAUUCC-------CAAUGUUGCCAAGUGGCAGUCAUUGGCUUUUGCAGUGGCUUCUCGAUUUUUCGGAUAGUGCUUAAACAUUUUCAG-AUUUACUGGCGGCAGG- ((.(((((.(((((((...(-------((((((((((....))))).))))))...))).))))(((..((((....))))..)))................-.......))))).)).- ( -35.40) >DroAna_CAF1 1520 105 + 1 AUUCCUCAGAACUCAAUUCAGCAUGCUGGAUGCUGCCAAGUGGCAGUCAUUGGCUUUUGCAGU--------------UCGGAUUGUGCUUAACAAUUUGCAAAAUUUAGUGCUACCAAA- ...................(((((((..(..((((((....))))))..)..))(((((((..--------------...((((((.....)))))))))))))....)))))......- ( -28.90) >DroSim_CAF1 2595 111 + 1 CUUCCGCUGCGCUCAAUUCC-------CAAUGUUGCCAAGUGGCACUCAUUGGCUUUUGCAGUGGCUUCUCGAUUUUUCAGAUAGUGCUUAAACAUUUUCAG-AUUUACUGGCGGCAGG- .....(((((...(((...(-------(((((.((((....))))..))))))...)))((((((..(((.((....)).((.((((......)))).))))-).)))))))))))...- ( -32.20) >DroEre_CAF1 15854 111 + 1 UUUCCGCUGCGCUCAAUUCC-------CAAUGUUGCCAAGUGGCAGUCAUUGGCUUUUGCAGUGGCUUCUCGAUUUUUCGGAUAGUGCUUAAACAUUUUCAG-AUUUACUGCCACCAGA- ......(((.((.......(-------((((((((((....))))).)))))).....)).(((((....(((....)))((.((((......)))).))..-.......)))))))).- ( -30.50) >consensus CUUCCGCUGCGCUCAAUUCC_______CAAUGUUGCCAAGUGGCAGUCAUUGGCUUUUGCAGUGGCUUCUCGAUUUUUCGGAUAGUGCUUAAACAUUUUCAG_AUUUACUGGCAGCAGA_ .....(((((((.(.((((........((((((((((....))))).)))))((....))...................)))).).))...........(((......)))))))).... (-17.74 = -19.34 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:23 2006