| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,123,780 – 20,123,873 |
| Length | 93 |
| Max. P | 0.984963 |
| Location | 20,123,780 – 20,123,873 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 56.16 |
| Mean single sequence MFE | -23.07 |
| Consensus MFE | -11.32 |
| Energy contribution | -10.89 |
| Covariance contribution | -0.43 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.49 |
| SVM decision value | 1.99 |
| SVM RNA-class probability | 0.984963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20123780 93 + 22407834 ----GUGCCUGCUAUC--------UACUUUUUAUCUUAUUAGGCACACUUUGCUUAAGUGCUCUAAUACGAGGUAUCUGCGU-AUCUUGC-----GGCACCAGCU------UCAAUU--- ----(((((.......--------............((((((((((...........)))).))))))((((((((....))-)))))).-----))))).....------......--- ( -23.50) >DroYak_CAF1 22707 100 + 1 ----GUGCCUGCUAUCCACUUGUAUACUUUUUAUCUCAUUAGGCAGCGUCUGCUUAAGAGCUUUACUACG-GAUAUCUGAGU-AUCUUGC-----AGCACCAUCU------UUUCUU--- ----((((.(((......................(((.((((((((...)))))))))))...((((.((-(....))))))-)....))-----))))).....------......--- ( -23.50) >DroAna_CAF1 11988 105 + 1 CUAUGUGCCGG--------------ACUUGGUAUACAAUCGGGCAUAA-AUAUUUAAGUGCCCCACUAUAGAACAUCUGAAUGAUUUUGAUGCUUGGCGCCUCCUCGAAAAUCAAUUAAC ....((((((.--------------....(((((..((((((((((..-........)))))).....(((.....)))...))))...))))))))))).................... ( -22.20) >consensus ____GUGCCUGCUAUC________UACUUUUUAUCUAAUUAGGCACAAUAUGCUUAAGUGCUCUACUACG_GAUAUCUGAGU_AUCUUGC_____GGCACCACCU______UCAAUU___ ....(((((((............................)))))))...........(((((......((((((.........))))))......))))).................... (-11.32 = -10.89 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:22 2006