| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,118,820 – 20,118,930 |
| Length | 110 |
| Max. P | 0.606829 |
| Location | 20,118,820 – 20,118,930 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.43 |
| Mean single sequence MFE | -29.63 |
| Consensus MFE | -18.23 |
| Energy contribution | -19.10 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.606829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20118820 110 + 22407834 -------GCACAAUCAAAAUUAUUCCGUGUAAUUUAUUAAUGCCGCGUGUGGCACAAUUUGUUCCAUGAAGCACGUAAAACGGAUUUAACGGCCAGAUAAGGCUGGACCUGUGCA---GA -------(((((.((........(((((....(((((...(((..((((..(((.....)))..))))..))).)))))))))).....(((((......)))))))..))))).---.. ( -32.10) >DroYak_CAF1 17775 110 + 1 -------GCACAAUCAAAAUAAUUCCGUGUAAUUUAUUAAUGCCGCGUGUGGCACAAUUCGUUUCAUGAAGCACGUAAAACGGAUUUAAUGGCCAGAUAAGGCUGGACCUGUGCA---GA -------(((((.......(((.(((((............(((((....)))))......((((....)))).......))))).)))..((((((......)))).))))))).---.. ( -30.60) >DroAna_CAF1 8082 111 + 1 UGCGGACACACAAUCAAAAUUAUUGCAUGUAAUUUAUUAAUGCCGUGUGUGGCACAAUUUGUUUCAUGAAGCAUGUAAAAUGGAUUUUACGCCC---------CUGAUGUGUCCAAAGGA ...(((((((((............(((((..(((....)))..)))))..(((......(((((....))))).((((((....))))))))).---------.)).)))))))...... ( -26.20) >consensus _______GCACAAUCAAAAUUAUUCCGUGUAAUUUAUUAAUGCCGCGUGUGGCACAAUUUGUUUCAUGAAGCACGUAAAACGGAUUUAACGGCCAGAUAAGGCUGGACCUGUGCA___GA .......(((((............((((............(((((....))))).(((((((((.(((.....))).)))))))))..))))((((......))))...)))))...... (-18.23 = -19.10 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:21 2006