Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,090,022 – 2,090,117 |
Length | 95 |
Max. P | 0.517438 |
Location | 2,090,022 – 2,090,117 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 84.97 |
Mean single sequence MFE | -26.82 |
Consensus MFE | -17.20 |
Energy contribution | -18.45 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.63 |
Structure conservation index | 0.64 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517438 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2090022 95 - 22407834 UAAAUUUGGCCAGCGGAAAAGUACAGCGGCAGCGAAAUGAGG--CAGGACUCGUGUUUGGUUUGGAGUCAGACACAACUGGCUGC-A-------AAGAUGGAAAC .........(((((...........)).(((((.....(((.--.....)))((((((((.......)))))))).....)))))-.-------....))).... ( -25.10) >DroSec_CAF1 107069 94 - 1 UAAAUUUGGCCAGCGGAAGAGUACAGCGGCAGCGAAAUGAGG--CAGGACUCGUGUUUGGUUUGGAGUCAGACACAACUGGCUGG---------GAGAUGGAAAC ....((..(((((.....((((...((..((......))..)--)...))))((((((((.......))))))))..)))))..)---------).......... ( -28.70) >DroSim_CAF1 106905 94 - 1 UAAAUUUGGCCAGCGGAAGAGUACAGCGGCAGCGAAAUGAGG--CAGGACUCGUGUUUGGUUUGGAGUCAGACACAACUGGCUGG---------GAGAUGGAAGC ....((..(((((.....((((...((..((......))..)--)...))))((((((((.......))))))))..)))))..)---------).......... ( -28.70) >DroYak_CAF1 111536 95 - 1 UAAAUUUGGCCAGCGGAGGAGAACAGCG-CACCGAAAUGAGGAGCAGGACUCGUGUU-----UGGAGUCAGACACAACUGG----GAAAGCUGGGAAAUGGAAAA .........(((((....(((..(.((.-..((.......)).)).)..)))(((((-----((....)))))))......----....)))))........... ( -24.80) >consensus UAAAUUUGGCCAGCGGAAGAGUACAGCGGCAGCGAAAUGAGG__CAGGACUCGUGUUUGGUUUGGAGUCAGACACAACUGGCUGG_________GAGAUGGAAAC .......((((((.........................(((........)))((((((((.......))))))))..))))))...................... (-17.20 = -18.45 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:46 2006