Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,096,753 – 20,096,854 |
Length | 101 |
Max. P | 0.738616 |
Location | 20,096,753 – 20,096,854 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 82.45 |
Mean single sequence MFE | -29.48 |
Consensus MFE | -20.01 |
Energy contribution | -19.73 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.23 |
Mean z-score | -2.16 |
Structure conservation index | 0.68 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738616 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20096753 101 + 22407834 UCCUGUGGCCUGACAUUGAAUUCAGCCAUUGCAUUGAAUUCAAUCAGUCAGGAACG----GUCAUCAAGGCCUCCCAGUUGUUUUCUCCGCUC---GACUCCUGUUCU ((..((((((((((((((((((((((....))..))))))))))..))))))...(----(((.....))))...............))))..---)).......... ( -28.90) >DroSec_CAF1 4119 101 + 1 UACGGUGGCCUGACAUUGAAUUCAGCCGUUGCAUUGAAUUCAAUCAGUCAGGAACG----GUCAUCAAGGCCUCCCAGUUGUUUUCUCCGCUC---GACUCCUGUUCU ..((((((((((((((((((((((((....))..))))))))))..))))))...(----(((.....))))...............)))).)---)........... ( -30.60) >DroSim_CAF1 4217 101 + 1 UCCGGUGGCCUGACAUUGAAUUCAGCCAUUGCAUUGAAUUCAAUCAGUCAGGAACG----GUCAUCAAGGCCUCCCAGUUGUUUUCUCCGCUC---GACUCCUGUUCU ((.(((((((((((((((((((((((....))..))))))))))..))))))...(----(((.....))))...............))))).---)).......... ( -30.50) >DroEre_CAF1 4279 101 + 1 UCCGGUGGCCUGACAUUGAAUUCAGCCAAUGCAUUGAAUUCAAUCAGUCAGGAAUC----GUCGUCAAGGCCUCCAAGCUGUUUACUUCGCUC---GAUUCCCGUCUU ...(..((.(((((((((((((((((....))..))))))))))..)))))(((((----(.((....(((......)))........))..)---)))))))..).. ( -28.20) >DroYak_CAF1 4143 101 + 1 UCCGGUGGCCUGACAUUGAAUUCAGUCAUUGCAUUGAAUUCAAUCAGUCAGGAACU----GUCGUCAAGGCCUCCAAGCUGUUUACUUCGUUC---AACUCCUGUUUU ...((.((((((((((((((((((((......))))))))))))((((.....)))----)..))).))))).))..................---............ ( -30.20) >DroAna_CAF1 3540 103 + 1 -CCGGUGUCCUGACAUUGAAUUUAGGCACUCCGUUG---UCCGUCAGUCAGGGACGGACAGUCGUCAAGGCUU-CAGGUUCUUUAUUCAGAUUUCUAAUACCCGCUUU -..(((((.((((....((((((((((.((.(((((---((((((.......))))))))).))...))))))-.)))))).....)))).......)))))...... ( -28.50) >consensus UCCGGUGGCCUGACAUUGAAUUCAGCCAUUGCAUUGAAUUCAAUCAGUCAGGAACG____GUCAUCAAGGCCUCCAAGUUGUUUACUCCGCUC___GACUCCUGUUCU ..(((.((((((((((((((((((((....))..))))))))))..))))))........(((.....)))............................))))).... (-20.01 = -19.73 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:20 2006