Locus 7178

Sequence ID 2L_DroMel_CAF1
Location 20,089,698 – 20,089,803
Length 105
Max. P 0.608863
window11458

overview

Window 8

Location 20,089,698 – 20,089,803
Length 105
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 87.78
Mean single sequence MFE -24.93
Consensus MFE -18.31
Energy contribution -18.12
Covariance contribution -0.19
Combinations/Pair 1.30
Mean z-score -1.57
Structure conservation index 0.73
SVM decision value 0.15
SVM RNA-class probability 0.608863
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20089698 105 + 22407834
GUGCUCAGACUUCAAUUAAAACGUUGAAUUUGUAUACAAAUUUUGUGUUUACGCGAGUAACACCGCAUUGAAUGAGCAUUGUAAUCGAUACUUGCAGCACUGCUG
(((((((...((((((..(((((..(((((((....)))))))..)))))..(((........))))))))))))))))..............(((....))).. ( -25.70)
>DroSec_CAF1 1006 105 + 1
GUGCUCAGAUUUUAAUUAAAACUUUGAAUUUGUAUACAAAUGUUGUGUUUACGCGAGUAACACCGCAUUGAAUGAGCAUUGUAAUCGAUACUUGCGGCACUGCUG
((((((((((((.............)))))))......(((((.(((((.((....))))))).)))))......(((..(((.....))).))))))))..... ( -23.72)
>DroSim_CAF1 1542 105 + 1
GUGCUCAGAUUUUAAUUAAAACUUUGAAUUCGUAUACAAAUGUUGUGUUUACGCGAGCAACACCGCAUUGAAUGAGCAUUGUAAUCGAUACUUGCGGCACUGCUG
(((((((((.(((((........))))).)).......(((((.(((((..(....).))))).)))))...)))))))..............(((....))).. ( -22.50)
>DroEre_CAF1 1975 105 + 1
GUGCUCAAAUUUGUAUUAAAAUGUUUAAUUUCUAUACGAAUGUUGUGUUUAUGAAAACAACACUGCACUGAAUAAGUACUGUAAUCGAUACUUACAGUACUGCUG
((((....((((((((..((((.....))))..))))))))(((((..........)))))...))))......((((((((((.......)))))))))).... ( -27.80)
>consensus
GUGCUCAGAUUUUAAUUAAAACGUUGAAUUUGUAUACAAAUGUUGUGUUUACGCGAGCAACACCGCAUUGAAUGAGCAUUGUAAUCGAUACUUGCAGCACUGCUG
(((((((((.(((((........))))).)).......(((((.(((((.((....))))))).)))))...)))))))...............((((...)))) (-18.31 = -18.12 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:20 2006