Locus 7177

Sequence ID 2L_DroMel_CAF1
Location 20,085,194 – 20,085,284
Length 90
Max. P 0.524447
window11457

overview

Window 7

Location 20,085,194 – 20,085,284
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 84.00
Mean single sequence MFE -33.02
Consensus MFE -22.29
Energy contribution -23.57
Covariance contribution 1.28
Combinations/Pair 1.19
Mean z-score -2.10
Structure conservation index 0.68
SVM decision value -0.02
SVM RNA-class probability 0.524447
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20085194 90 + 22407834
ACGCCUGCUGACCUACGAUCCGGAGGAGAUACCUGAAAGCCAGAGUAGUUUCACAACGCUCGUCCAGCAGGAGCUGCAAAUCAUGCAGCG
...(((((((....((((..((..(((((((((((.....))).)).))))).)..)).)))).))))))).((((((.....)))))). ( -33.30)
>DroSec_CAF1 6362 90 + 1
ACGCCUGCUGACCUACGAUCCGGAGGAGACACCUGGCAACCAGAGUUGUUUCACCACGCUCGUCCAGCAGGAGCUGCAAUUCAUGCAGCG
...(((((((....((((..(((..(((((((((((...)))).).))))))..).)).)))).))))))).((((((.....)))))). ( -37.60)
>DroSim_CAF1 7119 90 + 1
ACGCCUGCUGACCUACGAUCCGGAGGAGACUCCUGGCAGCCAGAGUUGUUUCACCACGCUCGUCCAGCAGGAGCUGCAAAUCAUGCAGCG
...(((((((....((((...((((....)))).((((((....)))))).........)))).))))))).((((((.....)))))). ( -37.20)
>DroEre_CAF1 8516 90 + 1
ACGCCUGCUGACCUACGAUCCGGAGGAGACACCUGGCGGCCAGAGUAGCUUUAGCACGCUCGUCCAACAGGAGCUGCAAGUCAUGCAGCG
.(((.(((((((.........((.(....).))..(((((..((((.((....))..)))).(((....))))))))..)))).)))))) ( -31.60)
>DroYak_CAF1 13914 90 + 1
ACGCCUGCUGACCUACGAUCCUGAGGAAACACCUGGCAGCCAGAGUAGUUUUACCUCGGUCGUCCAGCAAGAGCUGCAAAUUAUGCAGCG
.....(((((....((((.((.((((((((((((((...)))).)).))))..)))))))))).)))))...((((((.....)))))). ( -33.40)
>DroAna_CAF1 5983 90 + 1
GCGGCUGCUGACCUAUGACCCUGAGGAGACUCCCGGCUCCGGCAGCAAUUUCAAUAAUCUAGUCCAGCAGGAGCUAAAUAUGAUGCAACG
((..((((((..(((.((....(((....)))(((....)))...............)))))..))))))..))................ ( -25.00)
>consensus
ACGCCUGCUGACCUACGAUCCGGAGGAGACACCUGGCAGCCAGAGUAGUUUCACCACGCUCGUCCAGCAGGAGCUGCAAAUCAUGCAGCG
...(((((((....((((.......((((((((((.....))).)).))))).......)))).))))))).((((((.....)))))). (-22.29 = -23.57 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:19 2006