Locus 7176

Sequence ID	2L_DroMel_CAF1
Location	20,079,263 – 20,079,378
Length	115
Max. P	0.704869

overview

Window 6

Location	20,079,263 – 20,079,378
Length	115
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	89.71
Mean single sequence MFE	-26.48
Consensus MFE	-19.50
Energy contribution	-20.00
Covariance contribution	0.50
Combinations/Pair	1.19
Mean z-score	-1.89
Structure conservation index	0.74
SVM decision value	0.36
SVM RNA-class probability	0.704869
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20079263 115 - 22407834
AAUUAACGGAGGCAGGUCACAAAAGCACACAAGCUGUAAGUACAGUUGUGCUCAAUGUAGUAGUUGUGUUACAGUCGUCGAAAGACAACAAUGUUUUCAUUAAAACCAAAGAUUA
..((((.(((((((.((.(((..((((((...(((((....)))))))))))((((......))))))).)).((.(((....))).))..))))))).))))............ ( -28.60)
>DroSec_CAF1 556 114 - 1
AAUUAACUGAGACAGGUCACAAAAGCACACUGGCUGUAAGUACAGUUGUGCUCAACGUAGUAAUGGUGUUACAGU-GUUGAAAGACAACAAUGUUUCCAGUAAAACCAAAGAUUA
.....(((((((((.(((......(((((...(((((....))))))))))((((((..(((((...)))))..)-)))))..))).....))))).)))).............. ( -30.30)
>DroSim_CAF1 556 115 - 1
AAUUAACUGAGGCAGGUCACAAAAGCACAAAUGCUGUAAGUACAGUUGUGCUCAACGUAGUAAUGGUGUUACAGUAGUUGAAAGACAACAAUGUUUCCAUUAAAACCAAAGAUUA
..((((..((((((.(((......(((((...(((((....))))))))))(((((...(((((...)))))....)))))..))).....))))))..))))............ ( -26.20)
>DroEre_CAF1 543 115 - 1
AAUUAACUGAGACAGGUCACAAAAGCACCCAGAGUGUAAGUACAGUUGUGCUCAACGUAGUAGUAGUGUUACAGUAGAUGAAAGACAACGAUGUGGCUAUUAGAACCAAAGAUUA
......((((....(((((((..(((((...((.(((....))).)))))))..........((.((.((.((.....)).)).)).))..))))))).))))............ ( -20.80)
>consensus
AAUUAACUGAGACAGGUCACAAAAGCACACAGGCUGUAAGUACAGUUGUGCUCAACGUAGUAAUGGUGUUACAGUAGUUGAAAGACAACAAUGUUUCCAUUAAAACCAAAGAUUA
..((((..((((((.(((......(((((...(((((....))))))))))(((((...((((.....))))....)))))..))).....))))))..))))............ (-19.50 = -20.00 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:18 2006