| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,070,999 – 20,071,096 |
| Length | 97 |
| Max. P | 0.910780 |
| Location | 20,070,999 – 20,071,096 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 81.60 |
| Mean single sequence MFE | -27.83 |
| Consensus MFE | -22.45 |
| Energy contribution | -22.98 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.81 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.910780 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20070999 97 - 22407834 CAAGUACCAUAUAAAUAAGCGCGGCUCAAAAGCAGGUUUUGCAUUCAUUGUAAAACAUUGCCAAAGCGCGCAGCUGAUCAGCCGCAUAUAUAAAUCC------ ....................((((((....(((..((((((((.....))))))))..((((.....).))))))....))))))............------ ( -25.90) >DroSec_CAF1 14912 97 - 1 CAAGUACCAUAUAAAUAAGCGCGCCUCAAAAGCAGGUUUUGCAUUCAUUGUGAAACAGUGCCGAAGCGCGCAGCUGAUCAGCCGCAUAUAUAAAUCC------ ........(((((.....((((((.((....(((.((((..((.....))..))))..))).)).)))))).(((....)))....)))))......------ ( -27.70) >DroSim_CAF1 14062 97 - 1 CAAGCGCCAUAUAAAUAAGCGCGGCUCAAAAGCAGGUUUUGCAUUCAUUGUGAAACAGUGCCGAAGCUCGCAGCUGAUCAGCCGCAUAUAUAAAUCC------ ...((.............))((((((....(((..((((..((.....))..))))..(((........))))))....))))))............------ ( -26.02) >DroEre_CAF1 13641 103 - 1 CAAGUACCAUAUAAAUAAGCGCGGCUCGAAAGCAGGUUUUGCAUUCAUUGUAAAACAGUGCCAAAGCGCGCAGCUGAUCAGCCGCAGGUAUAAAUCCGCAUCU ..................((((((((.((.(((..((((((((.....)))))))).((((......)))).)))..)))))))).((.......)))).... ( -33.50) >DroYak_CAF1 13359 102 - 1 CAAGU-CCAUAUAAAUAAGCGCGGCUCGAAAGCAGGUUUUGCAUUCAUUGUAUAACAGUGCCUAAGAGCGCAGCUUAUCAGCCGCAGAUAUAAAUCCGCAUCC .....-............((((((((.((((((..(((.((((.....)))).))).((((......)))).)))).)))))))).(((....))).)).... ( -29.40) >DroAna_CAF1 13546 99 - 1 -GGCUUCUAUAUAAAUACGCGCGGAUCA-AAGCAGGUUUUGCAUUCACUGCAAAACAGUGCUCAGGCGUGCAGUUAACUC-CC-CCAAGCUCAGUCGUCGUCC -(((((..........(((((((..((.-.((((.((((((((.....))))))))..))))..))))))).))......-..-..)))))............ ( -24.45) >consensus CAAGUACCAUAUAAAUAAGCGCGGCUCAAAAGCAGGUUUUGCAUUCAUUGUAAAACAGUGCCAAAGCGCGCAGCUGAUCAGCCGCAUAUAUAAAUCC______ ....................((((((....(((..((((((((.....)))))))).((((......)))).)))....)))))).................. (-22.45 = -22.98 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:14 2006