Locus 7172

Sequence ID 2L_DroMel_CAF1
Location 20,063,844 – 20,063,954
Length 110
Max. P 0.680503
window11451

overview

Window 1

Location 20,063,844 – 20,063,954
Length 110
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 90.75
Mean single sequence MFE -26.28
Consensus MFE -19.40
Energy contribution -20.16
Covariance contribution 0.76
Combinations/Pair 1.11
Mean z-score -1.89
Structure conservation index 0.74
SVM decision value 0.30
SVM RNA-class probability 0.680503
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20063844 110 + 22407834
AUAUUUCCCCAACACGAUGACAAUAGUAUGUCGUAAUUUACAAUCUUGCGUUUCAAAUAGAACGCAGUAUCAUCAGUUCGGUCAAUGUAAAC------UGGGGAGCCUUAAGUUAC
....(((((((.....((((((......))))))..((((((....(((((((......)))))))(.(((........))))..)))))).------)))))))........... ( -26.60)
>DroSec_CAF1 6033 110 + 1
AUAUUUUCCCAACACGAUGACAAUAGUAUGUCGUAACUUACAAUCUUGCGUUUCAAAUAGAACGCAGUAUCAUCAGUUCGGUCAAUGUGAAC------UGGGGAGCCUUAAGUUAC
..................((((......))))((((((((.....((((((((......))))))))..((..(((((((.......)))))------))..))....)))))))) ( -27.10)
>DroSim_CAF1 6017 110 + 1
AUAUUUUACCAACACGAUGACAAUAGUAUGUCGUAACUUACAAUCUUGCGUUUCAAAUAGAACGCAGUAUCAUCAGUUCGGUCAAUGUGAAC------UGGGGAGCCUUAAGUUAC
..................((((......))))((((((((.....((((((((......))))))))..((..(((((((.......)))))------))..))....)))))))) ( -27.10)
>DroEre_CAF1 6267 116 + 1
AUAUUGCCACAACACAAUGACAAUAGUAUGUCGUAACAUACAAUCUUGCGUUUCAAAUAGAACGCAGUAUCAUCAAUUCGGUCAAUGUGGAAAUUUAAAUGGGAGCCGUAAGUAGC
.....((.((..((((.((((....((((((....))))))....((((((((......)))))))).............)))).)))).........((((...))))..)).)) ( -26.30)
>DroYak_CAF1 6134 110 + 1
AUAUUUCCACAACACAAUGACAAUAGUAUGUCGUAACUUACAAUCUUGCGUUUCAAAUAGAACGCAGUAUCAUCAAUUCGGUCAAUGUGAAA------UGGGGAGCCUAAAGUAAC
...(..(((...((((.((((....(((.((....)).)))....((((((((......)))))))).............)))).))))...------)))..)............ ( -24.30)
>consensus
AUAUUUCCCCAACACGAUGACAAUAGUAUGUCGUAACUUACAAUCUUGCGUUUCAAAUAGAACGCAGUAUCAUCAGUUCGGUCAAUGUGAAC______UGGGGAGCCUUAAGUUAC
....(((((((.((((.((((....(((.((....)).)))....((((((((......)))))))).............)))).)))).........)))))))........... (-19.40 = -20.16 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:13 2006