| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,060,054 – 20,060,154 |
| Length | 100 |
| Max. P | 0.584606 |
| Location | 20,060,054 – 20,060,154 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 76.58 |
| Mean single sequence MFE | -22.68 |
| Consensus MFE | -7.14 |
| Energy contribution | -7.66 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.31 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20060054 100 + 22407834 UGUUAA--UUUUUACGUGUUGUCUAGUGUAAGUUUCAUCGCCCAAGCCCGGUUUAUCCUGUUAAACU-GCAUUU-AAAC-----UGGGCUGCUGCUUCACAAUUUUUUU ......--.................(((.((((......((...(((((((((((...(((......-)))..)-))))-----)))))))).)))))))......... ( -23.20) >DroSec_CAF1 2230 101 + 1 UGUUAA--UUUUUACGUGUUGUCUAGUGCAAGUUUCGUCGCCCACGACCGGCUUAUC-UGGACAACUGGCGUUUGAAGC-----UGGGCUCUCGCUUCACAUUUUUUUU ......--.....(((((((((((((...(((((..((((....)))).)))))..)-))))))))..)))).((((((-----.((....)))))))).......... ( -28.80) >DroSim_CAF1 2238 101 + 1 UGUUAA--UUUUUACGUGUUGUCUAGUGUAAGUUUCAUCGCCCAAGCCCGGUUUAUCCUGUAAAACU-GCAUUUGAAAC-----UGGGCUCUCGCUUCACAAUUUUUUU ......--.........(((((..((((...((......))...((((((((((....((((....)-)))....))))-----))))))..))))..)))))...... ( -22.20) >DroEre_CAF1 2301 101 + 1 UGUUUA--UUUUUACGUGUUGUCUAGUGUAAGUUUCAUCUCCCAAGCCCGGUUAAUCCUGUUAAACU-GCAUAUAUUAC-----UGGGCUCUCGCUUCACAAUUAUUUU ......--.........(((((..((((..((......))....((((((((......(((......-)))......))-----))))))..))))..)))))...... ( -19.00) >DroAna_CAF1 1934 104 + 1 UGUUUAUAUUUUUACGUGUU-UUUAGUGUA-GUUUUUUCACUCGCGCCAGCACCCUCCGGGUGAACU-GCAUUUAACCAUUCGAUGGCUUGU--UUUCAUUACCAUUUU ...............(.(((-...((((((-((((........((....))((((...)))))))))-))))).))))....(((((..((.--...))...))))).. ( -20.20) >consensus UGUUAA__UUUUUACGUGUUGUCUAGUGUAAGUUUCAUCGCCCAAGCCCGGUUUAUCCUGUUAAACU_GCAUUUAAAAC_____UGGGCUCUCGCUUCACAAUUUUUUU .........................(((.((((......(((((......((((....((.........))....)))).....)))))....)))))))......... ( -7.14 = -7.66 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:11 2006