Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,087,503 – 2,087,596 |
Length | 93 |
Max. P | 0.995407 |
Location | 2,087,503 – 2,087,596 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 77.53 |
Mean single sequence MFE | -17.33 |
Consensus MFE | -9.88 |
Energy contribution | -10.36 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.42 |
Mean z-score | -2.71 |
Structure conservation index | 0.57 |
SVM decision value | 2.57 |
SVM RNA-class probability | 0.995407 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2087503 93 + 22407834 CCAAUCAAUCAUCGAAAUGCUAAUGCCGUAGAUGACUUCAUCAUCUGCCGGCAAUUCAUU-----CCCUUCAC------A--UCCAUUCUUAUCAUUUUAAUGCGA .........(((..(((((.(((((((((((((((.....))))))).))))).......-----........------.--.......))).)))))..)))... ( -19.00) >DroSec_CAF1 104651 93 + 1 CCAAUCAAUCAUCGAAAUGCUAAUGCUGUAGAUGACUUCAUCAUCUGCCGGCAAUUCAUU-----CCCCUCAC------U--UCCAUUCUUAUCAUUUUAAUGCGA .........(((..(((((.(((((((((((((((.....))))))).))))).......-----........------.--.......))).)))))..)))... ( -16.80) >DroSim_CAF1 104432 93 + 1 CCAAUCAAUCAUCGAAAUGCUAAUGCUGUAGAUGACUUCAUCAUCUGCCGGCAAUUCGUU-----CCCUUCAC------U--UCCAUUCUUAUCAUUUUAAUGCGA .........(((..(((((.(((((((((((((((.....))))))).)))))....((.-----......))------.--.......))).)))))..)))... ( -17.70) >DroEre_CAF1 107160 101 + 1 CCAAUCAAUCAUCGAAAUGCUAAUGCUGCUGAUGACUUCAUCAUUGGCCCGCAAUUCCCU-----CCCCUCACACUCGCAGUUUCAUGCUCAGCAUUUUAAUGCGA .........(((..(((((((..(((.((..((((.....))))..))..))).......-----............(((......)))..)))))))..)))... ( -24.20) >DroAna_CAF1 105956 100 + 1 CCCAUCAAUCAUUCUAAUGCUUAUCCUAUUGAUGACUUCAUCAUGUCCAAGUAAUUCAUUGAAGUCCCA--ACAAUCGUACCUUCAUACUUAUUAUUAUAUU---- .............................(((((....)))))......((((((....(((((.....--..........))))).....)))))).....---- ( -8.96) >consensus CCAAUCAAUCAUCGAAAUGCUAAUGCUGUAGAUGACUUCAUCAUCUGCCGGCAAUUCAUU_____CCCCUCAC______A__UCCAUUCUUAUCAUUUUAAUGCGA .......................((((((((((((.....))))))).)))))..................................................... ( -9.88 = -10.36 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:45 2006