Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,049,181 – 20,049,283 |
Length | 102 |
Max. P | 0.869238 |
Location | 20,049,181 – 20,049,283 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.54 |
Mean single sequence MFE | -23.62 |
Consensus MFE | -9.24 |
Energy contribution | -10.64 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.36 |
Mean z-score | -1.99 |
Structure conservation index | 0.39 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.869238 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20049181 102 - 22407834 -----UAAAAAUAAUCAAUACAACUGCAAUUUCUAGCUCGCACUCAGCACAGACGUGAGCUAGACAAUGCAAA---------GGACCCU----CAUGUUUUUCACAUCAAAUGUGAGGCC -----...................((((.(.((((((((((..((......)).)))))))))).).))))..---------....(((----(((((((........)))))))))).. ( -29.20) >DroSec_CAF1 231522 102 - 1 -----UAAAAAUAAUCAAUACAACUGCAAUUUCUAGCUUGUACCCAGCACAGACGUGAGCUAGACAAUGCAAA---------GGACCCU----CAUGUUUUUCACAUCAAAUGUGAGGAC -----...................((((.(.(((((((..(.............)..))))))).).))))..---------....(((----(((((((........)))))))))).. ( -24.12) >DroEre_CAF1 226321 100 - 1 -----UUAAAAUAAUCAAUACAACUGCAAUUUCU-GCUCGUCCUCAGCAUAGACGUGUGCUAGACAAUGCAAA---------GGAC-CU----CAUGUUUUUCACAUCAAGUGCCAGGCC -----....................(((.....)-))..(((((..((((.(.(........).).))))..)---------))))-..----...((((..(((.....)))..)))). ( -15.10) >DroYak_CAF1 225333 102 - 1 -----UAAAAAUAAUCAAUACAACUGCAAUUUCUGGCUCGUCCUCAGCAUAGACGUGUGCUAGACAAUGCAAA---------GGACUCU----CAUGUUUUUCACAUCAAGUGUGAGGCC -----...................((((.(.((((((.((((.........))))...)))))).).))))..---------((.(.((----((..(((........)))..))))))) ( -23.20) >DroAna_CAF1 242509 115 - 1 UUUGCUAAAAAAAAUCGAUG-AUAUGAAAUUAUUAUAU----CCCACCCCAGACAGGGGUUAGACACUGCAGGCGGAAUGUUGGAACCUUUCCAAUGCAUUUCAUAUCCUAUGCAAAAUA (((((.........((...(-((((((.....))))))----)..(((((.....)))))..))......(((.(((((((((((.....))))..)))))))....)))..)))))... ( -26.50) >consensus _____UAAAAAUAAUCAAUACAACUGCAAUUUCUAGCUCGUACUCAGCACAGACGUGAGCUAGACAAUGCAAA_________GGACCCU____CAUGUUUUUCACAUCAAAUGUGAGGCC ........................((((.(.(((((((((...............))))))))).).))))............................((((((((...)))))))).. ( -9.24 = -10.64 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:09 2006