Locus 7167

Sequence ID 2L_DroMel_CAF1
Location 20,047,675 – 20,047,773
Length 98
Max. P 0.560897
window11445

overview

Window 5

Location 20,047,675 – 20,047,773
Length 98
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 81.52
Mean single sequence MFE -24.65
Consensus MFE -15.71
Energy contribution -16.52
Covariance contribution 0.81
Combinations/Pair 1.19
Mean z-score -1.70
Structure conservation index 0.64
SVM decision value 0.05
SVM RNA-class probability 0.560897
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20047675 98 + 22407834
AAUUCUUUGUGUUUCGAAAAACACGUUCCUUGGUGUCGAGUGUUUUUUUAGGAUAAACUGCUCAAAGAGGCCCUCGAUGUUCAACAAUGUGUUAAUGG
...................((((((((....((..(((((.((((((((..(........)..)))))))).)))))..))....))))))))..... ( -23.00)
>DroSec_CAF1 230060 95 + 1
AAUUCUUUGUGUCUUGAAAUACUCAUACCUUGGUGUUGAGUGUU---UUGGGAUAAACUGCUCAAAGAGGCCCUCGAUGCUCAACAAUGUGUUAAUGG
..((((((((((((..((((((((((((....))).))))))))---)..))))).......))))))).((.(..((((........))))..).)) ( -28.31)
>DroEre_CAF1 224801 95 + 1
CACCCUUUAUGUUUGGAAAUACACGCUUCUUGGUGUCGAGUGUU---UUAGGAUAAACUGCUCAAAGAGGCCCUCGAUGCUCAACAAUGUGUUAAUGG
...((.........))....(((((.((.(((((((((((.(((---((..((........))...))))).)))))))).))).)))))))...... ( -19.80)
>DroYak_CAF1 223822 83 + 1
-----------UUUAGAAAUACAUUUCUCUUGGUGUCGAGUGUU---UUGGGAUAAAAUGC-CAAAGAGGCGCUCGAUGCUUAACAAUGUGUUAAUGG
-----------......((((((((......(((((((((((((---((.((........)-)...)))))))))))))))....))))))))..... ( -27.50)
>consensus
AAUUCUUUGUGUUUAGAAAUACACGUUCCUUGGUGUCGAGUGUU___UUAGGAUAAACUGCUCAAAGAGGCCCUCGAUGCUCAACAAUGUGUUAAUGG
....................((((((.....((..(((((.(((...(((((........)))))...))).)))))..)).....))))))...... (-15.71 = -16.52 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:08 2006