Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,047,216 – 20,047,332 |
Length | 116 |
Max. P | 0.717647 |
Location | 20,047,216 – 20,047,332 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.41 |
Mean single sequence MFE | -26.58 |
Consensus MFE | -19.68 |
Energy contribution | -19.44 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.14 |
Mean z-score | -1.99 |
Structure conservation index | 0.74 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717647 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20047216 116 + 22407834 CACCAGAUGACCUUUUUCGCACAGCGAAAUAAAAAUUGUUGAAUAAAAGGCAAAUAAAAUUUGUGUGUCACACAAAUAAGG-GGCGAAA---AGCCUCGUCAAAGUCUCGACAUGAGCAC .....(((((..((((((((.((((((........)))))).................(((((((.....)))))))....-.))))))---))..)))))...(.(((.....)))).. ( -27.70) >DroSec_CAF1 229589 116 + 1 CACCAGAUGACCUUUUUCGCACAGCGAAAUAAAAAUUGUUGAAUAAAAGGAAAAUAAAAUUUGUGUGUCACACAAAUAAGGGGGCGAAA---AGCCUCGUCAAAGUCUCGACAUGAGCA- .....(((((..((((((((.((((((........)))))).................(((((((.....)))))))......))))))---))..)))))...(.(((.....)))).- ( -27.70) >DroEre_CAF1 224320 116 + 1 CGCCAGAUGACCUUUUUCGCACAGCGAAAUAAAAAUUGUUAAAUAAAAGGCAAAUAAAAUUUGUGUGUCACACAAAUAAGGGGGCGAAA---AGCCUCGUCAAAGUCUCGACGUGAGCA- ((((......((((((((((...))))))......(((((........))))).....(((((((.....))))))))))).))))...---.(((.((((........)))).).)).- ( -29.00) >DroYak_CAF1 223383 116 + 1 CACCAGAUGACCUUUUUCGCAGAGCGAAAUAAAAAUUGUUAAAUAAAAGGCAAAUAAAAUUUGUGUGUCACACAAAUAAGGGGGCGAAA---AGCCUCGUCAAAGUCUCGACAUGAGCA- .....((.(((...((((((...))))))...................(((.......(((((((.....)))))))...(((((....---.))))))))...)))))..........- ( -26.20) >DroAna_CAF1 240695 115 + 1 CCGCAGAUGACCUUUUUCGCAC----AAAUAAAAAUUGUUAAAUAAAAGGCAAAUAAAAUUUGUGUGUCACACAUGUAUAAGAGUGAAAAAGAGCCUCGUCAAAGUCUCGACAUGGGUA- (((..(((((.(((((((((((----((((.....(((((........))))).....)))))))))((((.(........).)))).))))))..)))))...((....)).)))...- ( -22.30) >consensus CACCAGAUGACCUUUUUCGCACAGCGAAAUAAAAAUUGUUAAAUAAAAGGCAAAUAAAAUUUGUGUGUCACACAAAUAAGGGGGCGAAA___AGCCUCGUCAAAGUCUCGACAUGAGCA_ .....(((((.((.((((((...............(((((........))))).....(((((((.....)))))))......))))))...))..)))))...(.(((.....)))).. (-19.68 = -19.44 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:07 2006