Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,043,521 – 20,043,630 |
Length | 109 |
Max. P | 0.829788 |
Location | 20,043,521 – 20,043,630 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.01 |
Mean single sequence MFE | -35.80 |
Consensus MFE | -10.92 |
Energy contribution | -13.88 |
Covariance contribution | 2.96 |
Combinations/Pair | 1.08 |
Mean z-score | -1.89 |
Structure conservation index | 0.31 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829788 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20043521 109 + 22407834 AUUGGCACAUUGGCUGCACUUUGUGGU--GCUCCAUGGCCGAGGGAUCACUCG---------GCUCACCUGGCGUCGGAGGCAGCUACGGAGUUAAUAGCAACUUAACUUUGAUUAUAAU ..........(((((((.(((((...(--(((...((((((((......))))---------)).))...)))).))))))))))))(((((((((.......)))))))))........ ( -38.70) >DroSec_CAF1 225788 108 + 1 AUUGGCACAUUGGCUGCACUUUGUGCU--GCUCCGUGGCC-AGGGAUCACUCG---------GCUCACCUGGCGUUGGUGGCAGCUACGGAGUUAAUAGCAACUUAACUUUGAUUAUAAU ............((((.((((((((((--((((((..(((-(((((((....)---------).)).))))))..))).)))))).)))))))...)))).................... ( -37.00) >DroEre_CAF1 220718 108 + 1 AUUGGCACAUUGGCUGCACUUUGUGGU--GCUCCGUGGCC-AGGGAUCACUCA---------GGUCACCUGGCGUUGGUGGCUACUUCGGAGUUAAUAGCAACUUAGCUUUGAUUAUAAU ..((((.(((..((.(((((....)))--))......(((-(((((((.....---------)))).))))))))..)))))))..((((((((((.......))))))))))....... ( -42.50) >DroYak_CAF1 219769 117 + 1 AUUGGCACAUUGGCUGCACUUUGUGGU--GCUCCGAGGCC-AGGGAUCACCCAGCUCACCCAGCUCACCUGGCGCUGUGGGCAACUUCGGAGUUAAUAGCAACUCAACUUUGAUUAUAAU ..((((...((((..(((((....)))--)).)))).)))-)(((....))).((((((((((.....))))....))))))....((((((((...........))))))))....... ( -38.60) >DroAna_CAF1 235566 86 + 1 AUUGGCACAUUGGCUGCACUUUCUGAUCUCCCCCAUGGACAUUGGAUUGAAUG---------GCCAACCUGGGCUUGGAAGC-------------------------CUUUGAAAAUGAU ...(((...(((((((..(..((..((.(((.....))).))..))..)..))---------)))))((.......))..))-------------------------)............ ( -22.20) >consensus AUUGGCACAUUGGCUGCACUUUGUGGU__GCUCCGUGGCC_AGGGAUCACUCG_________GCUCACCUGGCGUUGGAGGCAACUACGGAGUUAAUAGCAACUUAACUUUGAUUAUAAU .....((((..(......)..))))....((((((..(((.(((.......................))))))..))).))).....(((((((((.......)))))))))........ (-10.92 = -13.88 + 2.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:05 2006