Locus 7161

Sequence ID 2L_DroMel_CAF1
Location 20,041,379 – 20,041,499
Length 120
Max. P 0.568607
window11431

overview

Window 1

Location 20,041,379 – 20,041,499
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.30
Mean single sequence MFE -30.82
Consensus MFE -24.75
Energy contribution -26.62
Covariance contribution 1.88
Combinations/Pair 1.09
Mean z-score -1.44
Structure conservation index 0.80
SVM decision value 0.07
SVM RNA-class probability 0.568607
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20041379 120 - 22407834
GGCUCAUCGGGGGAAAAUGUUUGGGGAUAAUGCCUGAGUAGCGGAAAAUCGGUGACCAAAAUUCAAUUAAUCAAGGUGCUGUUCCCUAAAGUUUUCCUCUGAUAUUUUGUAUACCCUUUA
.....(((((((((((((....(((((((..((((((.(((..(((....(....).....)))..))).)).))))..)))))))....)))))))))))))................. ( -37.90)
>DroSec_CAF1 223665 120 - 1
UACUCAUCGGGGGAAAAUGUUUGGGGAUAAUGCCUGAGUUGCGGAAAAUCGGUGACCGAAAUUCAAUUAAUCAAGGUGCUGUUCCCUAAAGUUUUCAUCUGAUAUUUUUUAUACCCUUUA
.....(((((..((((((....(((((((..((((..((((..(((..((((...))))..)))...))))..))))..)))))))....))))))..)))))................. ( -35.00)
>DroEre_CAF1 218540 118 - 1
GACUCGUC-GGGGAAAAUGUUUGCGGAUAAUGCCUUAGGUGCGGAAAAUCGGUGACCAAAAUUCAAUUAAUCAAGGUGCUGUUCCCUAAAGUUUUUCUCUGAUAUU-UGUAUAUCCCUUA
.....(((-((((((((..((((.(((((..(((((.(((...(((....(....).....))).....))))))))..)).))).))))..)))))))))))...-............. ( -27.10)
>DroYak_CAF1 217518 115 - 1
GACUCG---GGAGAAAAUGUUCGGGGAUAAUGCCUAGGUUGCGGAAAAUCGGUUACCAAAAUUCAAUUAAUAAAGGUGCUGUUCUCAAAAGUUUUUCUGUGAUAUU-UGUAUA-CCCUUA
.....(---((((((((..((.(((((((..((((.(((.((.(.....).)).)))...(((.....)))..))))..))))))).))...))))))...(((..-..))).-)))... ( -23.30)
>consensus
GACUCAUC_GGGGAAAAUGUUUGGGGAUAAUGCCUGAGUUGCGGAAAAUCGGUGACCAAAAUUCAAUUAAUCAAGGUGCUGUUCCCUAAAGUUUUCCUCUGAUAUU_UGUAUACCCCUUA
.....(((((((((((((....(((((((..((((..((((..(((....(....).....)))...))))..))))..)))))))....)))))))))))))................. (-24.75 = -26.62 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:56 2006