Locus 7160

Sequence ID 2L_DroMel_CAF1
Location 20,040,025 – 20,040,128
Length 103
Max. P 0.910576
window11430

overview

Window 0

Location 20,040,025 – 20,040,128
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 79.42
Mean single sequence MFE -26.56
Consensus MFE -14.85
Energy contribution -15.73
Covariance contribution 0.88
Combinations/Pair 1.15
Mean z-score -2.25
Structure conservation index 0.56
SVM decision value 1.07
SVM RNA-class probability 0.910576
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20040025 103 - 22407834
CCGUUUCCGUUCGA---CUUAACCUUUAAUUCGACUUUCUGAAUUAUGUACAAGUGA-AAAUCAUUGCAUUUUUUCAGGCU-------------AAGGACUUCGUUCUGCGGAAAUGGAA
((((((((((((((---.(((.....))).))))...((((((..(((((...(((.-....))))))))...))))))..-------------.(((((...))))))))))))))).. ( -28.30)
>DroSec_CAF1 222330 103 - 1
CCGUUUCCGUUCGC---CUUAACCUUUAAUUCGACUUUCUGAAUUAUGUACAAGUGA-AAAUCAUUGCAUUUUUCCAGGCU-------------AAGGACUUCGUUCUGGGGAAAUGGAA
((((((((....((---((.......(((((((......)))))))((((...(((.-....))))))).......)))).-------------.(((((...)))))..)))))))).. ( -24.50)
>DroEre_CAF1 217306 105 - 1
CCGUUUCCGUUCGCCCGCUCAACCUUUAAUUCGACUUUUUGGAUUAUGUAAAAAUAA-AAAUCAUUGCAUUUCUCCAGGC--------------AAGGACUUCGCUCUGCGGAAAUGGAA
((((((((((..((....................(((((((((..((((((..((..-..))..))))))...)))))).--------------)))(....)))...)))))))))).. ( -24.90)
>DroYak_CAF1 216030 107 - 1
CCGUUUCCGUUCGCUUGCUUAACCUUAAAUUCGACUUUAUGAAUUAUGUAAAAAUAAAAAAUCAUUGCAUUUUUUCAGUCU-------------AAGGACUUCGUUUUGCGGAAAUGGAA
((((((((((......((....(((((.....((((....(((..((((((..((.....))..))))))...))))))))-------------)))).....))...)))))))))).. ( -23.30)
>DroAna_CAF1 232949 111 - 1
CCGUUUCCGCUUUCCUGCUCAAACUUUAAUUCAAAUUUCUGAAUUAU----AAAUGA-AAAUCCUUGCAUUUUUGCAGGCUUGUCUGGCUGCUUGAAGA----GCUCAUCGGAAAUGGAA
(((((((((.......((((......(((((((......))))))).----......-...........(((..((((.(......).))))..)))))----))....))))))))).. ( -31.80)
>consensus
CCGUUUCCGUUCGC__GCUUAACCUUUAAUUCGACUUUCUGAAUUAUGUAAAAAUGA_AAAUCAUUGCAUUUUUCCAGGCU_____________AAGGACUUCGUUCUGCGGAAAUGGAA
((((((((((............(((((((((((......)))))))......(((((....)))))............................))))..........)))))))))).. (-14.85 = -15.73 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:55 2006