Locus 7158

Sequence ID 2L_DroMel_CAF1
Location 20,038,866 – 20,038,978
Length 112
Max. P 0.879524
window11427

overview

Window 7

Location 20,038,866 – 20,038,978
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.83
Mean single sequence MFE -27.79
Consensus MFE -23.06
Energy contribution -23.62
Covariance contribution 0.56
Combinations/Pair 1.11
Mean z-score -1.65
Structure conservation index 0.83
SVM decision value 0.91
SVM RNA-class probability 0.879524
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20038866 112 - 22407834
U--------AGCAAAAAGCAAAACCCAAACCGAAAACCCCAAGGAUUCUUGGGGGCGACCAUUAUGGCAAAUCCCUUUAGUUUGCUGCUCUCUCAGCCGUUUCUAUUUGCACAUCGUUUU
.--------.(((((.((..((((.............((((((....))))))(((.........(((((((.......))))))).........))))))))).))))).......... ( -26.47)
>DroSec_CAF1 221207 111 - 1
U--------AGCAAAAAGCAAAACCCAGACCGAAAACCCCAAGGAUUCUUGG-GGCGACCAUUAUGGCAAAUCCCUUUAGUUUGCCGCUCUCGCAGCCGUUUCUAUUUGCACAUCGUUUU
.--------.(((((.((..((((.............((((((....)))))-)((((......((((((((.......))))))))...))))....)))))).))))).......... ( -28.00)
>DroEre_CAF1 216145 119 - 1
UAGCAAAGUAGCAAAAAGCAAAACCCAGACCGAAAACCCCAAGGAUUCUUUG-GGCGACCAUUAUGGCAAAUCCCUUUAGUUUGCCGCUCACGCAGCCGUUUCUAUUUGCACAUCGUUUU
..(((((.(((.(((..((.................((((((((...)))))-)).)........(((((((.......)))))))((....)).))..))))))))))).......... ( -26.80)
>DroYak_CAF1 214912 112 - 1
U--------AGCAAAAAGCAAAACCCAGACCGAAAACCCCAAGGAUUCUUGGGGGCGACCAUUAUGGCAAAUCCCUUUAGUUUGCCGCUCUCGCAGCCGUUUCUAUUUGCACAUCGUUUU
.--------.(((((.((..((((............(((((((....)))))))((((......((((((((.......))))))))...))))....)))))).))))).......... ( -31.50)
>DroAna_CAF1 231769 111 - 1
U--------AGCAAAAAGCAAACCCCAAGCC-AAAACCCCAAGGAUACUUUGGGGCAACCAUUAUGGCAAAUCCCUUUAGUUUGUCGUUCUCGCAGCCGUUUCUAUUUGCACAUCGUUCU
.--------.(((((.((.((((.....((.-....((((((((...))))))))........(((((((((.......)))))))))....))....)))))).))))).......... ( -26.20)
>consensus
U________AGCAAAAAGCAAAACCCAGACCGAAAACCCCAAGGAUUCUUGGGGGCGACCAUUAUGGCAAAUCCCUUUAGUUUGCCGCUCUCGCAGCCGUUUCUAUUUGCACAUCGUUUU
..........(((((((((..................((((((....))))))(((.........(((((((.......)))))))((....)).)))))))...))))).......... (-23.06 = -23.62 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:52 2006