Locus 7155

Sequence ID 2L_DroMel_CAF1
Location 20,033,329 – 20,033,441
Length 112
Max. P 0.964323
window11424

overview

Window 4

Location 20,033,329 – 20,033,441
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 93.18
Mean single sequence MFE -38.02
Consensus MFE -33.58
Energy contribution -33.70
Covariance contribution 0.12
Combinations/Pair 1.09
Mean z-score -1.65
Structure conservation index 0.88
SVM decision value 1.57
SVM RNA-class probability 0.964323
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20033329 112 - 22407834
GGUCUGGCCGCAACUGUCUCAUUUGCGGUUGGCACAACGCAGUUACACAGCAAAUACCAAGGCUGCGGCUUUGUGGCCCAAAUGUCAUAGACUAGGUUCUGUUUGGACUGCU
.(((..(((((((.((...)).)))))))..).))...((((((..((((.....(((..(((..((....))..))).....(((...)))..))).))))...)))))). ( -38.50)
>DroSec_CAF1 215627 111 - 1
GGUCUGGCCGCAACUGUCUCAUUUGCGGUCGGCACAACGCAGUUACAAAGCA-AUACCAAGGCUGCGGCUUUGUGGCCCAAAUGUCAUAGACCAGGUUCUGUUUGGACUGCU
.((((((((((((.((...)).)))))))))).))...((((((...(((((-..(((..(((..((....))..))).....(((...)))..)))..))))).)))))). ( -42.20)
>DroSim_CAF1 213081 111 - 1
GGUCUGGCCGCAACUGUCUCAUUUGCGGUCGGCACAACGCAGUUACAAAGCA-AUACCAAGGCUGCGGCUUUGUGGCCCAAAUGUCAUAGACCAGGUUCUGUUUGGACUGCU
.((((((((((((.((...)).)))))))))).))...((((((...(((((-..(((..(((..((....))..))).....(((...)))..)))..))))).)))))). ( -42.20)
>DroEre_CAF1 210299 111 - 1
GGCCUGCCCGCAACUGUCUCAUUUGCGGUUGGGACAACGCAGUUACAAAGCA-AUACUAAGGCUGCGGCUUUGUGGCCCAAAUGUCAUAGACCAAUUUCUGUUUGAACUGCU
..(((..((((((.((...)).))))))..))).....((((((.(((((((-..........)))((.((((((((......))))))))))........)))))))))). ( -34.60)
>DroYak_CAF1 209161 111 - 1
GGUCUGCCCGCAACUGUCCCAUUUGCGGUUGGGAGGAAGCAGUUACAAAGCA-AUACUAAGGCUGCGGCUUUGUGGCCCAAAUGUCAUAGACCAAUUUCUGUUUCGACUGCU
((((...((.(((((((.......)))))))))..(((((((.......(((-..........)))((.((((((((......)))))))))).....)))))))))))... ( -32.60)
>consensus
GGUCUGGCCGCAACUGUCUCAUUUGCGGUUGGCACAACGCAGUUACAAAGCA_AUACCAAGGCUGCGGCUUUGUGGCCCAAAUGUCAUAGACCAGGUUCUGUUUGGACUGCU
...((((((((((.((...)).))))))))))......((((((...(((((...(((..(((..((....))..))).....(((...)))..)))..))))).)))))). (-33.58 = -33.70 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:49 2006