Locus 7154

Sequence ID 2L_DroMel_CAF1
Location 20,032,784 – 20,032,899
Length 115
Max. P 0.999962
window11422 window11423

overview

Window 2

Location 20,032,784 – 20,032,899
Length 115
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 94.80
Mean single sequence MFE -33.23
Consensus MFE -29.72
Energy contribution -29.61
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -3.33
Structure conservation index 0.89
SVM decision value 3.82
SVM RNA-class probability 0.999636
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20032784 115 + 22407834
-----AUAAAGCCCAAUGUACACUUGGUCAUAAACAAGUGUAUGACAUGACUAUUCAUGGAUGGCUUUGCGUGUCACAUAAAAUGGCGUAAAGUGGCCAUCAAAAAAUUGACAGAACAUU
-----.(((((((....(((((((((........)))))))))..(((((....)))))...)))))))..(((((......(((((........)))))........)))))....... ( -33.64)
>DroSec_CAF1 215103 115 + 1
-----AUAAAGCCCAAUGUACACUUGGCCAUAAACAAGUGUAUGACAUGACUAUUCAUGGAUGGCUUUGCGUGUCACAUAAAAUGGCGUAAAGUGGCCAUCAAAAAAUUGACAGGACAUU
-----.(((((((....(((((((((........)))))))))..(((((....)))))...)))))))(.(((((......(((((........)))))........))))).)..... ( -35.44)
>DroSim_CAF1 212506 115 + 1
-----AUAAAGCCCAAUGUACACUUGGCCAUAAACAAGUGUAUGACAUGACUAUUCAUGGAUGGCUUUGCGUGUCACAUAAAAUGGCGUAAAGUGGCCAUCAAAAAAUUGACAGGACAUU
-----.(((((((....(((((((((........)))))))))..(((((....)))))...)))))))(.(((((......(((((........)))))........))))).)..... ( -35.44)
>DroEre_CAF1 209778 115 + 1
-----AUAAAGCCCAUUGCACACUUGGCCAUAAACAAGUGUAUGCCAUGACUAUUCAUGGAUGGCUUUGCGUGUCACAUAAAAUGGCGUAAAGUGGCCAUCAAAAAAUUGACAGGACAUU
-----.(((((((......(((((((........)))))))...((((((....))))))..)))))))(.(((((......(((((........)))))........))))).)..... ( -35.64)
>DroYak_CAF1 208575 115 + 1
-----AUAAAGCCCAUUGCACACUUGGCCAUAAACAAGUGUAUGACAUGACUAUUCAUGGAUGGCUUUGCGUGUCACAUAAAAUGGCGUAAAGUGGUCAUCAAAAAAUUGACAGGACAUU
-----.(((((((.(((..(((((((........)))))))....(((((....)))))))))))))))(.(((((......(((((........)))))........))))).)..... ( -30.64)
>DroAna_CAF1 225636 120 + 1
GGAAUUUAAAGCCCAUUGCACACUUAGCCAUAAACAAGUGUAUGACAUGACUAUUCAUGAAUGGCUUUGCGUGUCACAUAAAAUGGCGUAAAGUGGCCAUCAAAAAAUUGGCAGAACAUC
..........(((.(((((((.(..((((((..((....))....(((((....))))).))))))..).))))........(((((........))))).....))).)))........ ( -28.60)
>consensus
_____AUAAAGCCCAAUGCACACUUGGCCAUAAACAAGUGUAUGACAUGACUAUUCAUGGAUGGCUUUGCGUGUCACAUAAAAUGGCGUAAAGUGGCCAUCAAAAAAUUGACAGGACAUU
......(((((((......(((((((........)))))))....(((((....)))))...)))))))..(((((......(((((........)))))........)))))....... (-29.72 = -29.61 +  -0.11)

alignment

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secondary structure

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dotplot

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Window 3

Location 20,032,784 – 20,032,899
Length 115
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 94.80
Mean single sequence MFE -31.04
Consensus MFE -30.31
Energy contribution -30.25
Covariance contribution -0.06
Combinations/Pair 1.06
Mean z-score -2.61
Structure conservation index 0.98
SVM decision value 4.93
SVM RNA-class probability 0.999962
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20032784 115 - 22407834
AAUGUUCUGUCAAUUUUUUGAUGGCCACUUUACGCCAUUUUAUGUGACACGCAAAGCCAUCCAUGAAUAGUCAUGUCAUACACUUGUUUAUGACCAAGUGUACAUUGGGCUUUAU-----
...((..(((((.......((((((........)))))).....))))).))((((((...(((((....)))))...((((((((........)))))))).....))))))..----- ( -32.90)
>DroSec_CAF1 215103 115 - 1
AAUGUCCUGUCAAUUUUUUGAUGGCCACUUUACGCCAUUUUAUGUGACACGCAAAGCCAUCCAUGAAUAGUCAUGUCAUACACUUGUUUAUGGCCAAGUGUACAUUGGGCUUUAU-----
...((..(((((.......((((((........)))))).....))))).))((((((...(((((....)))))...((((((((........)))))))).....))))))..----- ( -32.30)
>DroSim_CAF1 212506 115 - 1
AAUGUCCUGUCAAUUUUUUGAUGGCCACUUUACGCCAUUUUAUGUGACACGCAAAGCCAUCCAUGAAUAGUCAUGUCAUACACUUGUUUAUGGCCAAGUGUACAUUGGGCUUUAU-----
...((..(((((.......((((((........)))))).....))))).))((((((...(((((....)))))...((((((((........)))))))).....))))))..----- ( -32.30)
>DroEre_CAF1 209778 115 - 1
AAUGUCCUGUCAAUUUUUUGAUGGCCACUUUACGCCAUUUUAUGUGACACGCAAAGCCAUCCAUGAAUAGUCAUGGCAUACACUUGUUUAUGGCCAAGUGUGCAAUGGGCUUUAU-----
...((..(((((.......((((((........)))))).....))))).))((((((..((((((....))))))..((((((((........)))))))).....))))))..----- ( -34.90)
>DroYak_CAF1 208575 115 - 1
AAUGUCCUGUCAAUUUUUUGAUGACCACUUUACGCCAUUUUAUGUGACACGCAAAGCCAUCCAUGAAUAGUCAUGUCAUACACUUGUUUAUGGCCAAGUGUGCAAUGGGCUUUAU-----
...(((..(((((....))))))))(((...............)))......((((((...(((((....)))))...((((((((........)))))))).....))))))..----- ( -24.96)
>DroAna_CAF1 225636 120 - 1
GAUGUUCUGCCAAUUUUUUGAUGGCCACUUUACGCCAUUUUAUGUGACACGCAAAGCCAUUCAUGAAUAGUCAUGUCAUACACUUGUUUAUGGCUAAGUGUGCAAUGGGCUUUAAAUUCC
........(((........((((((........)))))).....((.(((((..((((((.(((((....)))))..............))))))..)))))))...))).......... ( -28.86)
>consensus
AAUGUCCUGUCAAUUUUUUGAUGGCCACUUUACGCCAUUUUAUGUGACACGCAAAGCCAUCCAUGAAUAGUCAUGUCAUACACUUGUUUAUGGCCAAGUGUACAAUGGGCUUUAU_____
...((..(((((.......((((((........)))))).....))))).))((((((...(((((....)))))...((((((((........)))))))).....))))))....... (-30.31 = -30.25 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:48 2006