Locus 7153

Sequence ID 2L_DroMel_CAF1
Location 20,031,995 – 20,032,100
Length 105
Max. P 0.968691
window11421

overview

Window 1

Location 20,031,995 – 20,032,100
Length 105
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 72.55
Mean single sequence MFE -24.88
Consensus MFE -9.01
Energy contribution -10.23
Covariance contribution 1.22
Combinations/Pair 1.11
Mean z-score -2.50
Structure conservation index 0.36
SVM decision value 1.63
SVM RNA-class probability 0.968691
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20031995 105 + 22407834
CCACAUAUCCGUAUCCA-----UAUCCACUGAAU--ACGGAUAUGG---ACA-CCCGGCGUAUGCGUGAUAUCUGCAAC-AGCUCGUAUCUCCAUACU---GCCUUUAAGAUGCCCAUCA
...(((((((((((.((-----.......)).))--))))))))).---...-...((((((((.(.(((((..((...-.))..))))).)))))).---))).....(((....))). ( -34.10)
>DroSec_CAF1 214398 105 + 1
GCUCACAU------CCA-----UAUAUACUGAAU--UUAUAUACGUGU-CCAUCCCGGCGUAUGCGUGAUAUCUGCAAC-AGCACUUAUCUCCAUACUGCUGCCUUUAAGAUGCCCAUCA
((((((((------..(-----((((........--.)))))..))))-......(((((((((.(.((((..(((...-.)))..)))).)))))).)))).......)).))...... ( -22.00)
>DroSim_CAF1 211728 111 + 1
GCUCAUAUCCGUAUCCA-----UAUAUACUGAAU--UUAUAUACGUGU-CCAUCCCGGCGUAUGCGUGAUAUCUGCAAC-AGCACUUAUCUCCAUACUGCUGCCUUUAAGAUGCCCAUCA
..........(((((..-----((((((......--.)))))).....-......(((((((((.(.((((..(((...-.)))..)))).)))))).)))).......)))))...... ( -22.70)
>DroEre_CAF1 208890 100 + 1
CCACAUAU------CCA-----UAUCCAUUGAAU--AGGUUUAUGG---ACA-CCCGGCGUAUGCGUGAUAUCUCCCCCAUGCACUUAUCUUCAUACU---GCCUUUAAGAUGGCCAUCA
.......(------(((-----((.((.......--.))..)))))---)..-...(((...((((((..........))))))..((((((.(....---....).))))))))).... ( -21.00)
>DroYak_CAF1 207734 99 + 1
CCACAUAU------CCA-----UAUCCAUUAAAA--AAGUUUAUGG---ACA-CCCGGCGUAUGCGUGAUAUCUGCGAC-UGCACUUAUCUCCAUACU---GCCUUUAAGAUGCCCGUCA
.......(------(((-----((..(.......--..)..)))))---)..-...((((((((.(.((((..(((...-.)))..)))).)))))).---))).....(((....))). ( -24.80)
>DroAna_CAF1 224764 113 + 1
CAACACAGCCUUCGCCUUAUUUUAUCUUCCCAAGGCAAUUUCAUGG--CAUA-CGCUGCGUAUACGCGAUAUUUACAUC-AGCAUUUAU--CCAUUAUGGAG-CUUGAAGAUGCCAAUCA
.................................((((.(((((.((--(...-.((((((....)))(((......)))-))).....(--((.....))))-))))))).))))..... ( -24.70)
>consensus
CCACAUAU______CCA_____UAUCCACUGAAU__AAGUAUAUGG___ACA_CCCGGCGUAUGCGUGAUAUCUGCAAC_AGCACUUAUCUCCAUACU___GCCUUUAAGAUGCCCAUCA
........................................................((((((((.(.((((..(((.....)))..)))).))))))....))).....(((....))). ( -9.01 = -10.23 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:46 2006