Locus 7152

Sequence ID 2L_DroMel_CAF1
Location 20,031,758 – 20,031,891
Length 133
Max. P 0.684934
window11419 window11420

overview

Window 9

Location 20,031,758 – 20,031,854
Length 96
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 91.94
Mean single sequence MFE -27.34
Consensus MFE -20.96
Energy contribution -20.92
Covariance contribution -0.04
Combinations/Pair 1.11
Mean z-score -1.73
Structure conservation index 0.77
SVM decision value 0.31
SVM RNA-class probability 0.684934
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20031758 96 - 22407834
CGGGACGUUAUUUGAUUUAUAUAACGCUCUUAUUUUGAUGGGCAUUUUCUCUGAAUGAACACGAAGCCGCCUCUUUU--------AGGCAGUUGGUCUCGUCUG
(((((((((((.........)))))(((....(((((.((..(((((.....)))))..)))))))..((((.....--------)))))))..)))))).... ( -22.70)
>DroSec_CAF1 214161 96 - 1
CGGGGCGUUAUUUGAUUUAUAUAACGCUCUUAUUUUGAUGGGCAUUUUCUCUGAAUGAACACGAAGCCGCCUCUUUU--------AGGCAGUUGGUUUCGUCUG
.((((((((((.........)))))))))).........(..(((((.....)))))..)((((((((((((.....--------))))....))))))))... ( -29.30)
>DroSim_CAF1 211492 96 - 1
CGGGGCGUUAUUUGAUUUAUAUAACGCUCUUAUUUUGAUGGGCAUUUUCUCUGAAUGAACACGAAGCCGCCUCUUUU--------AGGCAGUUGGUCUCGUCUG
.((((((((((.........)))))))))).........(..(((((.....)))))..)((((..((((((.....--------))))....))..))))... ( -26.50)
>DroEre_CAF1 208647 104 - 1
CAGGGCGUUAUUUGAUUUAUAUAACGCUCUUAUUUUGAUGGGCAUUUGCUCGGAAUGAACAAGAAGCCGGCUCUUUUGCCUAAACAGACAGUUGGUCUCGUCUG
.((((((((((.........))))))))))........((((((...((.(((.............))))).....))))))..(((((((.....)).))))) ( -29.92)
>DroYak_CAF1 207498 96 - 1
CGGGGCGUUAUUUAAUUUAUAUAACGUUCUUAUUUUGAUGGGCAUUUUCGCUGAAUGAACACGAAGCUGCCUCUUUU--------AGGCAGUUGGUCUCGUCUG
.((((((((((.........))))))))))......(((((((....(((.((......)))))((((((((.....--------)))))))).))).)))).. ( -28.30)
>consensus
CGGGGCGUUAUUUGAUUUAUAUAACGCUCUUAUUUUGAUGGGCAUUUUCUCUGAAUGAACACGAAGCCGCCUCUUUU________AGGCAGUUGGUCUCGUCUG
.((((((((((.........))))))))))......(((((((((((.....))))).......(((.((((.............)))).)))...)))))).. (-20.96 = -20.92 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 20,031,790 – 20,031,891
Length 101
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.32
Mean single sequence MFE -25.97
Consensus MFE -17.86
Energy contribution -17.92
Covariance contribution 0.06
Combinations/Pair 1.30
Mean z-score -1.77
Structure conservation index 0.69
SVM decision value 0.01
SVM RNA-class probability 0.539948
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20031790 101 - 22407834
CUCGUUAAGUGCCUGCGAAAAUGAUUUU---CAUUUAUGC----------------CGGGACGUUAUUUGAUUUAUAUAACGCUCUUAUUUUGAUGGGCAUUUUCUCUGAAUGAACACGA
.((((((((((((((((.(((((.....---))))).)))----------------.(((.((((((.........)))))))))..........))))))))......)))))...... ( -23.10)
>DroSec_CAF1 214193 101 - 1
CUCGUUAAGUGCCUGCGAAAAUGAUUUU---CAUUUAUGC----------------CGGGGCGUUAUUUGAUUUAUAUAACGCUCUUAUUUUGAUGGGCAUUUUCUCUGAAUGAACACGA
.((((((((((((((((.(((((.....---))))).)))----------------.((((((((((.........)))))))))).........))))))))......)))))...... ( -27.40)
>DroSim_CAF1 211524 100 - 1
CUCGUUAAGUGCCGGC-AAAAUGAUUUU---CAUUUAUGC----------------CGGGGCGUUAUUUGAUUUAUAUAACGCUCUUAUUUUGAUGGGCAUUUUCUCUGAAUGAACACGA
(((((((((..(((((-((((((.....---))))).)))----------------)))((((((((.........)))))))).....)))))))))(((((.....)))))....... ( -30.60)
>DroEre_CAF1 208687 100 - 1
CUCGUUAAGUGCCUGUG-AAAUGAUUUU---CAUUUAUGC----------------CAGGGCGUUAUUUGAUUUAUAUAACGCUCUUAUUUUGAUGGGCAUUUGCUCGGAAUGAACAAGA
.(((.(((((((((((.-(((((.....---)))))....----------------.((((((((((.........)))))))))).......)))))))))))..)))........... ( -27.50)
>DroYak_CAF1 207530 100 - 1
CUCGUUAAGUGUCUGUG-CAAUGAUUUU---CAUUUAUGC----------------CGGGGCGUUAUUUAAUUUAUAUAACGUUCUUAUUUUGAUGGGCAUUUUCGCUGAAUGAACACGA
.(((((.((((...(((-(((((.....---)))).....----------------.((((((((((.........))))))))))...........))))...)))).)))))...... ( -22.80)
>DroAna_CAF1 224531 119 - 1
CUCGUUAAGUGUCUGUA-AAAUUGUUUUGGGCCUCUAUACUACACAAGUCUGUGGAUGGUGCGUUAUUUGAUUUAUACGUCGUUUCCAUUUUGUGUGGCAUUUUGUCUGAAUGAACACGA
........((((..((.-........(..(((....((.(((((((((...(((((....((((............))))....)))))))))))))).))...)))..)))..)))).. ( -24.40)
>consensus
CUCGUUAAGUGCCUGCG_AAAUGAUUUU___CAUUUAUGC________________CGGGGCGUUAUUUGAUUUAUAUAACGCUCUUAUUUUGAUGGGCAUUUUCUCUGAAUGAACACGA
.((((((((((((.(((.(((((........))))).))).................((((((((((.........))))))))))..........)))))))......)))))...... (-17.86 = -17.92 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:45 2006