Locus 7150

Sequence ID 2L_DroMel_CAF1
Location 20,028,670 – 20,028,763
Length 93
Max. P 0.951168
window11415

overview

Window 5

Location 20,028,670 – 20,028,763
Length 93
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 83.58
Mean single sequence MFE -30.92
Consensus MFE -21.72
Energy contribution -22.64
Covariance contribution 0.92
Combinations/Pair 1.11
Mean z-score -2.50
Structure conservation index 0.70
SVM decision value 1.41
SVM RNA-class probability 0.951168
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20028670 93 + 22407834
AGUUUUUGACUUUUGCUGGCCCUAAUUAUGCGACACGUU-GCAAAUGUGGCCCAAGGGCA-GGUAAGUCGGCUUUCACUGGCUUACCAAAAGGAU
......((.((((((..((((...(((.(((((....))-))))))..))))))))))))-((((((((((......))))))))))........ ( -31.80)
>DroSim_CAF1 208199 93 + 1
AGUUUUUGACUUUUGCUGGCCCUAAUUAUGCGACACGUU-GCAAAUGUGGCCCAAGGGCG-GGAAAGUCGGCUUUCACUGGCUCACCAAAAGGAU
.........((((((..((((...(((.(((((....))-))))))..))))...(((((-((((((....))))).)).))))..))))))... ( -27.90)
>DroEre_CAF1 205346 93 + 1
AGUUUUUGCCUCUUGUUGGCCCUAAUUAUGCGACACGUU-GCAAAUAUGGCCCAAGGGCA-GGUAAGCCGGUUUCUACUGGCUUACCAAAAGGAU
......((((.((((..((((...(((.(((((....))-))))))..))))))))))))-(((((((((((....)))))))))))........ ( -40.60)
>DroYak_CAF1 203863 93 + 1
AGUUUUUGACUCUAGCUGGCACUAAUUAUGCGACACGUU-ACAAAUGUGGCCCAAGGGCA-GGUAAGCCGGUUUUUACUGGCUUAGCAAAAGGAU
.(((((((..........(((.......)))..(((((.-....)))))...))))))).-(.(((((((((....))))))))).)........ ( -25.60)
>DroAna_CAF1 221764 94 + 1
AAUUCUUGAGCUUUGUUAGC-AUAAUUACUCAACACGUCAACAAAUGUGGCCCAAGGGCAAGGCAAGUCGGUUCUUAAAGGCUUGCCAACGGGAA
..((((((.(((.....)))-............(((((......)))))(((....)))..((((((((..........))))))))..)))))) ( -28.70)
>consensus
AGUUUUUGACUUUUGCUGGCCCUAAUUAUGCGACACGUU_GCAAAUGUGGCCCAAGGGCA_GGUAAGUCGGUUUUUACUGGCUUACCAAAAGGAU
.................................((((((....))))))(((....)))..((((((((((......))))))))))........ (-21.72 = -22.64 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:41 2006