| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,027,765 – 20,027,880 |
| Length | 115 |
| Max. P | 0.920711 |
| Location | 20,027,765 – 20,027,880 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 93.00 |
| Mean single sequence MFE | -25.10 |
| Consensus MFE | -21.24 |
| Energy contribution | -23.08 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.920711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20027765 115 + 22407834 CACUUUAUGGCCAAUUGGGGUGACAUUUCGGACUUAAUUCCAGUCCACGGUGCACAUGUCACAUAUCUGUCACAGUGAACUUCCCUCAUACAAAUAAUCUAGUUGGUCAAGAUUU .......((((((((((((((((((....(((((.......)))))...((((....).))).....)))))).((((.......))))........))))))))))))...... ( -32.90) >DroSec_CAF1 204607 109 + 1 CACUUUAUGGCCAAUUGGGGUGACAUUUCGGACUUAAUUCCAGUCCACGGUGCACAUGUCACAUAUC------AGUGAACCUCUCUCAUACAAAUAAUCUAGUUGGUCAAGAUUU .......(((((((((((((((((((...(((((.......)))))..(.....)))))))).....------.((((.......))))........))))))))))))...... ( -30.70) >DroSim_CAF1 207333 109 + 1 CACUUUAUGGCCAAUUGGGGUGACAUUUCGGACUUAAUUCCAGUCCACGGUGCACAAGUCACAUAUC------AGUGAACUUCUCUCAUACACAUAAUCUAGUUGGUCAAGAUUU .......(((((((((((((((.((((..(((((.......)))))..)))))))(((((((.....------.))).))))...............))))))))))))...... ( -31.10) >DroEre_CAF1 204427 109 + 1 CACUUUAUGGCCAAUUGGGGUGACAUUUCUGACUUAAUUCCAGUCCACGGUGUACAUGUCACAUAUC------AGUGAACUUCUCUCCCACAAAUAAUCUACUUUCUCAAGAUUU ...............((((((((((((...((((.......))))...))))).))).((((.....------.))))........)))).....(((((.........))))). ( -16.50) >DroYak_CAF1 202985 109 + 1 CACUUUAUGGCCAAUUGGGGUGACAUUUCUGACUUAAUUCCAGUCCACGGUGCACAUGUCACAUAUC------AGCGAACUUCUCUCAUACAAAUAAUCUACUUGCUCAAGAUUU .......((..(((.(((((((((((....((((.......))))...(.....)))))))).(((.------((.(.....).)).))).......)))).)))..))...... ( -14.30) >consensus CACUUUAUGGCCAAUUGGGGUGACAUUUCGGACUUAAUUCCAGUCCACGGUGCACAUGUCACAUAUC______AGUGAACUUCUCUCAUACAAAUAAUCUAGUUGGUCAAGAUUU .......(((((((((((((((((((...(((((.......)))))..(.....))))))))............((((.......))))........))))))))))))...... (-21.24 = -23.08 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:40 2006