Locus 7145

Sequence ID 2L_DroMel_CAF1
Location 20,016,518 – 20,016,623
Length 105
Max. P 0.689728
window11408

overview

Window 8

Location 20,016,518 – 20,016,623
Length 105
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 82.81
Mean single sequence MFE -22.97
Consensus MFE -17.38
Energy contribution -17.22
Covariance contribution -0.16
Combinations/Pair 1.17
Mean z-score -1.69
Structure conservation index 0.76
SVM decision value 0.33
SVM RNA-class probability 0.689728
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20016518 105 - 22407834
UCAUCUUUUUCGGGAAGGGUGGUCCCCUUCAAAGCCCCUCCCCCCCACCG--CCCCUUUUCCACAACAAGUGCACUCGAGAAACAAUUUCAGAUUGCACUCAAAGUU
...........((((((((((((.......................))))--)))..)))))......((((((.((((((.....)))).)).))))))....... ( -24.50)
>DroSec_CAF1 194008 101 - 1
UCAUCUUUUUCGGGAAGGGUGGUCCCCUUCAAAGCCCUCCCCC----UCG--ACCGUUUGCCCCAACAAGUGCACUCGAGAAACAAUUUCAGAUUGCACUCAAAGUU
...........(((.(((((.(.......)...))))).))).----...--................((((((.((((((.....)))).)).))))))....... ( -22.30)
>DroSim_CAF1 196705 98 - 1
UCAUCUUUUUCGGGAAGGGUGGUCCCCUUCAAAGGCCCC---C----CCG--UCCUUUUGCCCCAACAAGUGCACUCGAGAAACAAUUUCAGAUUGCACUCAAAGUU
...........((((.(((.((..((.......))..))---)----)).--))))............((((((.((((((.....)))).)).))))))....... ( -24.50)
>DroEre_CAF1 191739 99 - 1
UCAUAUUUUUGGUGGAAGGUGGCCCCCUCCAAGUCCC-C---C----UUGCCCCCCUUUUCCCCAACAAGUGCACUCGAGAAACAAUUUCAGAUUGCACUCAAAGCU
........((((.((((((.(((..............-.---.----..))).))...))))))))..((((((.((((((.....)))).)).))))))....... ( -22.17)
>DroYak_CAF1 192508 90 - 1
UCAUAUUUUUCGGGGAGGCUGGUCCCCUUCAAGUCCC-----------------CCUUUUCUCCAACAAGUGCACUCGAGAAACAAUUUUAGAUUGCACUCAAAGCU
...........((((.((((((......)).))))))-----------------))............((((((.((.((((....)))).)).))))))....... ( -21.40)
>consensus
UCAUCUUUUUCGGGAAGGGUGGUCCCCUUCAAAGCCC_C___C____CCG__CCCCUUUUCCCCAACAAGUGCACUCGAGAAACAAUUUCAGAUUGCACUCAAAGUU
.............((((((.....))))))......................................((((((.((((((.....)))).)).))))))....... (-17.38 = -17.22 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:34 2006