Locus 7142

Sequence ID 2L_DroMel_CAF1
Location 20,008,206 – 20,008,307
Length 101
Max. P 0.520158
window11401

overview

Window 1

Location 20,008,206 – 20,008,307
Length 101
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 82.68
Mean single sequence MFE -25.04
Consensus MFE -18.36
Energy contribution -19.37
Covariance contribution 1.00
Combinations/Pair 1.10
Mean z-score -1.39
Structure conservation index 0.73
SVM decision value -0.03
SVM RNA-class probability 0.520158
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20008206 101 - 22407834
----CUUCUAUGAAU-AUGCUU-ACUUUAUUGGAGCGUGAGUCCCUGAGCAU-UCAUCCCAUUCCCGUGCAGUUGGCACUCUCUGUCACGCUUUGAUUGAGUUCAGUC
----...........-..(((.-((((.((..((((((((((......))..-.............((((.....))))......))))))))..)).))))..))). ( -25.10)
>DroSec_CAF1 185930 99 - 1
----CUUCUAUGAAU-AUGCUU-ACUUUAUUGGAGCGUGAGUCCCUGAGCAU-UCAUCCCAUUCCCGUGCAGUUGGCACU--CUGUCACGCUUUGAUUGAGUUCAGUC
----...........-..(((.-((((.((..((((((((((......))..-.............((((.....)))).--...))))))))..)).))))..))). ( -25.10)
>DroSim_CAF1 188423 99 - 1
----CUUCUAUGAAU-AUGCUU-ACUUUAUUGGAGCGUGAGUCCCUGAGCAU-UCAUCCCAUUCCCGUGCAGUUGGCACU--CUGUCACGCUUUGAUUGAGUUCAGUC
----...........-..(((.-((((.((..((((((((((......))..-.............((((.....)))).--...))))))))..)).))))..))). ( -25.10)
>DroEre_CAF1 183323 98 - 1
----C-UCUAUGAAU-AUAUUU-ACUUUAUUGGAGCGUGAGUCCACGGGCAU-UCAUCCCAUUCCCGCUCAGUUGACACU--CUGUCACGCUUUGAUUGAGUUCAGCC
----.-.........-......-.........(((((.((((....(((...-....))))))).))))).(((((.(((--(.((((.....)))).))))))))). ( -24.80)
>DroWil_CAF1 291349 102 - 1
AAAGUUACUCCGAAUGAUAUUCAGCUUUAUUGGAGCGUGAGGUCAGAGACAGAGUUUUCCAUCCUAAUGUAGUUGGCACU--CUGUCACGCUUUGAUUGCCUAC----
...........((((...)))).((...((..(((((((....)...((((((((...(((..(((...))).))).)))--)))))))))))..)).))....---- ( -26.20)
>DroYak_CAF1 184367 99 - 1
----CUUCUAUGAAU-AUAUUU-GCUUUAUUGGAGCGUGAGUCCAUGAGCAU-UCAUCCCAUUCCCAUGCAUUUGGCACU--CUGUCACGCUUUGAUUGAGUUCAACC
----...........-......-((((.((..(((((((((((((...((((-.............))))...))).)).--...))))))))..)).))))...... ( -23.92)
>consensus
____CUUCUAUGAAU_AUACUU_ACUUUAUUGGAGCGUGAGUCCAUGAGCAU_UCAUCCCAUUCCCGUGCAGUUGGCACU__CUGUCACGCUUUGAUUGAGUUCAGUC
.......................((((.((..((((((((((......))................((((.....))))......))))))))..)).))))...... (-18.36 = -19.37 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:28 2006