Locus 7140

Sequence ID 2L_DroMel_CAF1
Location 20,001,265 – 20,001,383
Length 118
Max. P 0.949438
window11397

overview

Window 7

Location 20,001,265 – 20,001,383
Length 118
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 91.53
Mean single sequence MFE -30.02
Consensus MFE -25.30
Energy contribution -26.54
Covariance contribution 1.24
Combinations/Pair 1.08
Mean z-score -1.80
Structure conservation index 0.84
SVM decision value 1.39
SVM RNA-class probability 0.949438
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20001265 118 + 22407834
AGAAAAGCAUAGUUUCAUGGAUUUAUCAGGUAGUAUAGCCCUGAACUUCAUGGCUUAUGAUUGCGCAAAGUGGUCAGCUUUGUUUGCGGUCGUAAUUAAUCUGAUUAUGAUCUGGUAA
.((((.......))))..(((((.(((((((......(((.((.....)).)))(((((((((((((((((.....)))))))..))))))))))...)))))))...)))))..... ( -34.40)
>DroSec_CAF1 184033 118 + 1
AGAAAAGCAUAGUUUCAUGGAUUUAUCAGGUAGUAUAGCCCUGAACUUCAUGGCUUAUGAUUGCGCAAAGUGGUCAGCUUUGUAUGCGGUCGUAAUUAAUCUGAUUAUGAUCUGGUUA
.((((.......))))..(((((.(((((((......(((.((.....)).)))(((((((((((((((((.....)))))))..))))))))))...)))))))...)))))..... ( -34.40)
>DroSim_CAF1 186542 118 + 1
AGAAAAGUAUAGUUUCAUGGAUUUAUCAGGUAGUAUAGCCCUGAACUUCAUGGCUUAUGAUUGCGCAAAGUGGUCAGCUUUGUAUGCGGUCGUAAUUAAUCUGAUAAUCAUCUGGUUA
.((((.......))))..(((((((((((((......(((.((.....)).)))(((((((((((((((((.....)))))))..))))))))))...)))))))))..))))..... ( -34.20)
>DroEre_CAF1 181487 118 + 1
AGAAAAGUAUAGUUUCAUGGAUUUAUCAGGUAGUAUAGCCCUGAACUUCAUGGCUUAUGAUUGCGUAAAGUGGUCAGCUUUGUAUGCGGUCGUAAUUAAUCUGAUUAUGAUCUGGUAA
.((((.......))))..(((((.(((((((......(((.((.....)).)))(((((((((((((((((.....))))..)))))))))))))...)))))))...)))))..... ( -32.50)
>DroYak_CAF1 182448 110 + 1
AGAAAAAUAUAGUUUCAUGGAUUUAUCAUUUAGUAUAGCCCUGAACUUCAAGUCUUUUAAUUGCAUAAAGUGAUCAGUUUUGUAUGCGGUCGUAAUUAAUCUGAUUAUGA--------
.........(((((....((((((....(((((.......)))))....))))))...)))))......((((((((..(((..(((....)))..))).))))))))..-------- ( -14.60)
>consensus
AGAAAAGUAUAGUUUCAUGGAUUUAUCAGGUAGUAUAGCCCUGAACUUCAUGGCUUAUGAUUGCGCAAAGUGGUCAGCUUUGUAUGCGGUCGUAAUUAAUCUGAUUAUGAUCUGGUAA
.((((.......))))..(((((.(((((((......(((.((.....)).)))(((((((((((((((((.....)))))))..))))))))))...)))))))...)))))..... (-25.30 = -26.54 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:25 2006