| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,078,052 – 2,078,167 |
| Length | 115 |
| Max. P | 0.947210 |
| Location | 2,078,052 – 2,078,167 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.38 |
| Mean single sequence MFE | -28.97 |
| Consensus MFE | -11.61 |
| Energy contribution | -11.18 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.70 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.40 |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.947210 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2078052 115 - 22407834 ACUUU-UUAAAAGCUGCAAUUCUGUUGCACGAUACUCACUGAUAUUUU-AGUAGAUACUU---CUACUUCUACGCGGGUCAAGAUACUUUUGUAUCUGUAAAGUGUGGAAGAGAUGCAAA .....-........((((.((((.(..(((..(((...(((.......-((((((....)---)))))......)))....((((((....)))))))))..)))..).)))).)))).. ( -31.72) >DroSec_CAF1 95065 109 - 1 ACUUU-UUAAAAGCUGCAAUUCUGUUGCAGGAUACUCACUGAUAUUUU-AGUAGAUACUU---------CUGCGCGGAUCAAGAUACUUUUGUAUCUGUAAACUGUGGAGGAGAUUUAAA ....(-(((((..(((((((...)))))))....((.(((((....))-)))))...(((---------((.(((((....((((((....)))))).....))))).))))).)))))) ( -30.80) >DroSim_CAF1 94844 110 - 1 ACUUUUUUAAAAGCUGCAAUUCUGUUGCAGGAUACUCACUGAUAUUUU-AGUAGAUACUU---------CUGCGCGGGUCAAGAUACUUUUGUAUCUGUAAAUUGUGGAGGAGAUUUAAA .....((((((..(((((((...)))))))....((.(((((....))-)))))...(((---------((.(((((....((((((....)))))).....))))).))))).)))))) ( -29.60) >DroEre_CAF1 97322 108 - 1 ACUUU-UUAAAAGCUGCAAUUCGGCUGCAGUAUACUCACUGGCAUCUA-AGUAGAUACUU---------CUGCGCGGGUCAAGAUACUUUUGUAUCUGGAAAUUGUGAGCGAG-CUUAAA .....-......((((((.......))))))...(((.((.((((((.-.(((((....)---------))))..)))((.((((((....)))))).))...))).)).)))-...... ( -29.70) >DroYak_CAF1 98841 108 - 1 ACUUU-UUAAAAGCUGCAAUUCGGUUGCUGGAUACUCGCUGGCAUUUA-AGUAGAUACUU---------UUGCGCGGGUCAAGAUACUUUUGUAUCUGAAGCUGGUGAACGAG-UUUAAA .....-...........((((((.(..(..(..((((((..(((...(-(((....))))---------.)))))))))..((((((....))))))....)..)..).))))-)).... ( -28.80) >DroAna_CAF1 93895 101 - 1 ACUUU-CUGGUUGUUACAACUCGGUACUUACAUUUGAGAU-GCAUUUAAAGUGCAUCUCUGUA------UCAUGUGUUUCAA-----UCUUGUAUCUGAGUCU-----AUGUG-UUUUAA .....-..(((((..(((....(((((........(((((-((((.....))))))))).)))------))...)))..)))-----))..............-----.....-...... ( -23.20) >consensus ACUUU_UUAAAAGCUGCAAUUCGGUUGCAGGAUACUCACUGACAUUUA_AGUAGAUACUU_________CUGCGCGGGUCAAGAUACUUUUGUAUCUGUAAAUUGUGGACGAG_UUUAAA ...................((((.((((((..(((....((((.......((((...............))))....))))((((((....)))))))))..)))))).))))....... (-11.61 = -11.18 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:38 2006