Locus 7139

Sequence ID 2L_DroMel_CAF1
Location 19,996,253 – 19,996,362
Length 109
Max. P 0.640411
window11396

overview

Window 6

Location 19,996,253 – 19,996,362
Length 109
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 89.15
Mean single sequence MFE -22.91
Consensus MFE -20.10
Energy contribution -20.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.88
SVM decision value 0.22
SVM RNA-class probability 0.640411
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19996253 109 - 22407834
CCAUCCUCCAUCCCCCAUCCCAAUCUCAGUCCCAAUCGCCAGGUCAGUUCAAAAUCGCAGCUCCAGUAAAACGGCUCCAAAAAGCCGAUGCAACGCAGCUGUCCGAUGG
..............(((((.........(..(..(((....)))..)..)......((((((...((....(((((......))))).....))..))))))..))))) ( -21.10)
>DroSec_CAF1 179050 100 - 1
------UCCAUC-CACAUCCCAAUCUCAGUUCCAAUCCCCAGGCCAGUUCAAAAUCGCAGCUCCAGUA--ACGGCUCCAAAAAGCCGAUGCAACGCAGCUGUCCGAUGG
------.(((((-..................((........)).............(((((((..(((--.(((((......))))).)))...).))))))..))))) ( -22.00)
>DroSim_CAF1 181563 100 - 1
------UCCAUC-CACAUCCCAAUCUCAGUUCCAAUCCCCAGGCCAGUUCAAAAUCGCAGCUCCAGUA--ACGGCUCCAAAAAGCCGAUGCAACGCAGCUGUCCGAUGG
------.(((((-..................((........)).............(((((((..(((--.(((((......))))).)))...).))))))..))))) ( -22.00)
>DroEre_CAF1 176715 100 - 1
------CCCAUC-CCUGUCCCCAUCCACAUCCCAAUCCCCAGGCCAGUUCAAAAUCGCAGCUCCGGUA--ACGGCUCCAAAAAGCCGAUGCAACGCAGCUGUCCGAUGG
------.(((((-((((......................)))).............((((((.(((((--.(((((......))))).)))..)).))))))..))))) ( -26.55)
>consensus
______UCCAUC_CACAUCCCAAUCUCAGUCCCAAUCCCCAGGCCAGUUCAAAAUCGCAGCUCCAGUA__ACGGCUCCAAAAAGCCGAUGCAACGCAGCUGUCCGAUGG
.......(((((...................((........)).............(((((((..(((...(((((......))))).)))...).))))))..))))) (-20.10 = -20.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:24 2006