Locus 7138

Sequence ID 2L_DroMel_CAF1
Location 19,994,427 – 19,994,520
Length 93
Max. P 0.621281
window11395

overview

Window 5

Location 19,994,427 – 19,994,520
Length 93
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 85.11
Mean single sequence MFE -26.08
Consensus MFE -16.33
Energy contribution -18.21
Covariance contribution 1.88
Combinations/Pair 1.14
Mean z-score -2.12
Structure conservation index 0.63
SVM decision value 0.18
SVM RNA-class probability 0.621281
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19994427 93 + 22407834
UCGAAUGGGCCAAAAGGGCAUGCACAGGGCUUAAUGCCCUUCAAACGGAGU-------ACCAACGCGUAUUAAGCAUUCGAAUUUAAAAUCCAGCAACU----C
(((((((.(((.....)))((((..(((((.....)))))......((...-------.))...))))......)))))))..................----. ( -26.00)
>DroSec_CAF1 177260 93 + 1
UCGAAUGGCCCAAAAGGGCAUCCACAGGGCUUAAUGCCCUUCUAACGGAGU-------ACCGACGCGUAUUAAGCAUUCGAAUUUAAAAUCCAGCAACU----C
(((((((((((....))))....(((((((.....))))).....(((...-------.)))....))......)))))))..................----. ( -27.40)
>DroSim_CAF1 179771 93 + 1
UCGAAUGGGCCAAAAGGGCAUCCACAGGGCUUAAUGCCCUUCUAACGGAGU-------ACCAACGCGUAUUAAGCAUUCGAAUUUAAAAUCCAGCAACC----C
(((((((((((.....))).(((..(((((.....)))))......)))..-------.))...((.......))))))))..................----. ( -23.30)
>DroEre_CAF1 174938 97 + 1
UCGAAUGGGCCAAAAAGGCAUCCGCAGGGCUUAAUGGCCGUCUAACGGAAC-------ACCAAGCAUUAUUAAGCAUUCGAAUUUAAAAUCCAGGAAUCCUGCC
(((((((((((.....))).((((.(.((((....)))).)....))))..-------.))..((........))))))))..........((((...)))).. ( -25.30)
>DroYak_CAF1 175976 100 + 1
UCGAAUGGGCCAAAAAGGCAUCCACAGGGCCUAAUGGCCUCCUAACGGAGAACGGAGUACCAAUGUGUAUAAGGCAUUCGAAUUUAAAAUCCAGGAACU----C
(((((((.(((.....))).(((....((((....))))(((....)))....)))((((......))))....)))))))..................----. ( -28.40)
>consensus
UCGAAUGGGCCAAAAGGGCAUCCACAGGGCUUAAUGCCCUUCUAACGGAGU_______ACCAACGCGUAUUAAGCAUUCGAAUUUAAAAUCCAGCAACU____C
((((((..(((.....))).........(((((((((.((((....))))................)))))))))))))))....................... (-16.33 = -18.21 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:23 2006