| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,994,155 – 19,994,248 |
| Length | 93 |
| Max. P | 0.532939 |
| Location | 19,994,155 – 19,994,248 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 91.05 |
| Mean single sequence MFE | -19.83 |
| Consensus MFE | -15.00 |
| Energy contribution | -15.08 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.76 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19994155 93 + 22407834 AAAAUCAAAGCCUGGCAAAAAAGGAAAAAACACACAGACGCA-AGUUGAUUCCAAAUCGCAGGGGCAAACAAUGAAGUGUGUGUUUGCUCAGUC ...........((((((((..........((((((.(((...-.)))(.((((........)))))..........)))))).))))).))).. ( -20.40) >DroSec_CAF1 176994 92 + 1 AAAAUCAAAGCCUGGCAAA-AAGGAAAAAACACACAGACGCA-AGCUGAUUCCAAAUCGCAGGGGCAAACAAUGAAGUGUGUGUUUGCUCAGUC ...........((((((((-.........((((((((.(...-.)))(.((((........)))))..........)))))).))))).))).. ( -18.70) >DroSim_CAF1 179505 92 + 1 AAAAUCAAAGCCUGGCAAA-AAGGAAAAAACACACAGACGCA-AGUUGAUUCCAAAUCGCAGGGGCAAACAAUGAAGUGUGUGUUUGCUCAGUC ...........((((((((-.........((((((.(((...-.)))(.((((........)))))..........)))))).))))).))).. ( -20.50) >DroEre_CAF1 174676 89 + 1 AAAAUCAAAGCCUGGCAGA-----GAAAAACACACAGGCACAAAGUUAAUUCGAAAUCGCAGGGGCAAACAAUGAAGUGUGUGUUUGCUCAGUC .........(((((.....-----..........))))).......................(((((((((..........))))))))).... ( -18.96) >DroYak_CAF1 175714 88 + 1 AAAAUUAAAGCCUGGCAGA-----GAA-AACACACAGUCGCAAAGUUAAAUCCAAAUCGCAGGGGCAAACAAUGAAGUGUGUGUUUGCUCAGUC .............(((.((-----(.(-((((((((.(..((..(((...(((........)))...)))..)).).))))))))).))).))) ( -20.60) >consensus AAAAUCAAAGCCUGGCAAA_AAGGAAAAAACACACAGACGCA_AGUUGAUUCCAAAUCGCAGGGGCAAACAAUGAAGUGUGUGUUUGCUCAGUC ...........((((((((..........((((((.(((.....)))...........((....))..........)))))).))))).))).. (-15.00 = -15.08 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:22 2006