| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,992,398 – 19,992,516 |
| Length | 118 |
| Max. P | 0.608317 |
| Location | 19,992,398 – 19,992,516 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 66.28 |
| Mean single sequence MFE | -23.78 |
| Consensus MFE | -9.91 |
| Energy contribution | -10.47 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608317 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19992398 118 + 22407834 -CAGGAAUCUGCUCAAAAAGGUAAA-UAGUGUGGUUAGUACAAACAUAGUACUUAAUAAAAAUAUACCACUUAUGUUCAUCAGUAUUUACAGCUUAAAUGGGCGAUGCUUAUGCGUGAUU -....((((((((((..((((((((-((.((((((((((((.......)))).))))...((((((.....)))))))).)).)))))))..)))...))))))((((....)))))))) ( -23.00) >DroSec_CAF1 175210 116 + 1 -CACGAAUCUGCCCA--AAGGUAAA-UAGUGUGUUUAGUACAAUCAUAGUACUUAAUAAUAAUAUACCACUUAUGUUAAUCAGUAUUUACAACUUGAAUGGGCAGUGCUUAAACGUGAUU -((((...(((((((--((((((((-((.((((((.(((((.......))))).)))).(((((((.....)))))))..)).)))))))..)))...)))))))........))))... ( -29.60) >DroSim_CAF1 177746 90 + 1 -CACGAAUCUGCCCA--AAGGUAAA-UAGUGUGUUUAGUGCAA---UAGUACUU-----------------------AAUCAGUAUUUACAACUUAAAUGGGCAGUGCUUAAACGUGAUU -((((...(((((((--((((((((-((.((.(((.(((((..---..))))).-----------------------))))).)))))))..)))...)))))))........))))... ( -27.80) >DroEre_CAF1 172943 92 + 1 CCAAGAAACUGCUUA--AAAGUUUACAGGUCCGUUCAGUGCAAAUAUAUUACU-------AAUACGCAACUU--------UAGUACU-----------UGGGCAGUGCUUACACGUCAUU ..(((..((((((..--.(((((((.((...(((..((((.........))))-------...)))...)).--------))).)))-----------).)))))).))).......... ( -14.70) >consensus _CACGAAUCUGCCCA__AAGGUAAA_UAGUGUGUUUAGUACAAACAUAGUACUU______AAUAUACCACUU_____AAUCAGUAUUUACAACUUAAAUGGGCAGUGCUUAAACGUGAUU ..(((...(((((((...((((.....((.....))(((((.......)))))......................................))))...)))))))..))).......... ( -9.91 = -10.47 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:19 2006