Locus 7134

Sequence ID 2L_DroMel_CAF1
Location 19,990,590 – 19,990,682
Length 92
Max. P 0.655352
window11390

overview

Window 0

Location 19,990,590 – 19,990,682
Length 92
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 77.70
Mean single sequence MFE -31.76
Consensus MFE -21.80
Energy contribution -24.68
Covariance contribution 2.88
Combinations/Pair 1.06
Mean z-score -1.52
Structure conservation index 0.69
SVM decision value 0.25
SVM RNA-class probability 0.655352
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19990590 92 - 22407834
AAUGAAAAUUCAUAUUUCUCGGCGGCACAAAUGCCG--AGAGGAGCGUUGGCAGCGCUG---------GUGGCUCUGGUGGCUCUGGUCUCCGGCUUCUUUCC
.((((....)))).((((((((((.......)))))--)))))(((((.....)))))(---------(.((..((((.(((....))).))))..))...)) ( -30.10)
>DroSec_CAF1 173375 101 - 1
AAUGAAAAUUCAUAUUUCUCGGCGGCACAAAUGCCG--AGAGGAGCGCUGGCAGAGCUGGUGGCGCUGGUGGCUCUGGUGCCUCUGGUCUUCGGCUUCUUUCC
.((((....))))...((((((((.......)))))--)))((((.(((((.(((.(..(.(((((..(.....)..))))).)..))))))))))))).... ( -41.00)
>DroSim_CAF1 175942 101 - 1
AAUGAAAAUUCAUAUUUCUCGGCGGCACAAAUGCCG--AGAGGAGCGCUGGCAGCGCUGGUGGCGCUGGUGGCUCUGGUGCCUCUGGUCUUCGGCUUCUUUCC
.((((....))))...((((((((.......)))))--)))((((.(((((.((.((..(.(((((..(.....)..))))).)..))))))))))))).... ( -40.40)
>DroEre_CAF1 171433 74 - 1
AAUGAAAAUUCAUAUUUCUCGGCGGCAGAAAUGCCA--AGAGGAGCGCUGGUAGCGCU---------------------------GGUCUGCGGCUACUUUCC
.((((....)))).((((((...((((....)))).--.)))))).(..((((((((.---------------------------.....)).))))))..). ( -23.80)
>DroYak_CAF1 172237 76 - 1
AAUGAAAAUUCAUAUUUCUCAGCGUCAUAAAUGCCGUGAGAGGAGCGCUGGUAGCGCU---------------------------GGUCUCCGGCUUCUUUCC
.((((....))))...................((((.((((..(((((.....)))))---------------------------..))))))))........ ( -23.50)
>consensus
AAUGAAAAUUCAUAUUUCUCGGCGGCACAAAUGCCG__AGAGGAGCGCUGGCAGCGCUG_________GUGGCUCUGGUG_CUCUGGUCUCCGGCUUCUUUCC
.((((....)))).((((((..(((((....)))))...)))))).(((((.((.(((((.((((((((.....)))))))).))))))))))))........ (-21.80 = -24.68 +   2.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:18 2006