Locus 7131

Sequence ID 2L_DroMel_CAF1
Location 19,983,687 – 19,983,789
Length 102
Max. P 0.603769
window11382

overview

Window 2

Location 19,983,687 – 19,983,789
Length 102
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 78.80
Mean single sequence MFE -25.42
Consensus MFE -12.32
Energy contribution -14.36
Covariance contribution 2.04
Combinations/Pair 1.04
Mean z-score -1.94
Structure conservation index 0.48
SVM decision value 0.14
SVM RNA-class probability 0.603769
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19983687 102 + 22407834
AGUCGGCGAAGAUUUUCUCCU-----------------UACCCAGUGCGUAAACUCUUU-UUUACACUAGGAGAAAUUAUCUUCUCUUGGCUUAAAUAUGGGUCAAAUUUAUAGCCACAA
.((.(((((((((((((((((-----------------.....(((..(((((......-))))))))))))))))..))))))..((((((((....)))))))).......))))).. ( -28.90)
>DroSec_CAF1 166571 101 + 1
AGUCGGCAAAGAUUUUCUCCU-----------------UCCUCAGUGCGUAAACUCUUU-UCUACACUAGGAGAAAUUAUC-UCUCUUGGCUUAAAUAUGGGUCAGAUUUAUAGCCACAA
.((.(((..((((((((((((-----------------.....((((............-....))))))))))))..)))-)...((((((((....)))))))).......))))).. ( -23.09)
>DroSim_CAF1 169124 102 + 1
AGUCGGCGAAGAUUUUCUCCU-----------------UCCUCAGUGCGUAAACUCUUUUUUUACACUAGGAGAAAUAGUC-UCUCUUGGCUUAAAUAUGGGUCAAACUUAUAGCCACAA
.((.(((((((((((((((((-----------------.....((((...(((.....)))...))))))))))))..)))-).))((((((((....)))))))).......))))).. ( -25.10)
>DroEre_CAF1 164637 114 + 1
AGUCAGCGAAGAUUUUCUCCAUCGAAAAUCGGCGGUUUUCUUUGGUGCGUAAACUCUCU-UUUACACUAGGAAAAAUUAA-----CUAGGACUUAAUAUGGGUCAAAUUUAUAGCCACAA
..........(((((((......)))))))(((((((((..(((((..(((((......-))))))))))..))))))..-----....(((((.....))))).........))).... ( -23.20)
>DroYak_CAF1 165494 117 + 1
AGUCAGCGAAGAUUUUCUCCUUCGAAAAUCGGUGGCUU-CCUCGGUGCGUAAACUCUCU-UUUACACAAGGAAAAAUAAUC-GCUCUUGGAUUUAUUAUGGGCCAAAUUUAUAGCCACAA
..........(((((((......))))))).(((((((-(((...((.(((((......-))))).)))))))........-((((.............))))..........))))).. ( -26.82)
>consensus
AGUCGGCGAAGAUUUUCUCCU_________________UCCUCAGUGCGUAAACUCUUU_UUUACACUAGGAGAAAUUAUC_UCUCUUGGCUUAAAUAUGGGUCAAAUUUAUAGCCACAA
.((.(((..((((((..(((............................(((((.......))))).((((((((........)))))))).........)))..))))))...))))).. (-12.32 = -14.36 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:11 2006