Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,983,568 – 19,983,658 |
Length | 90 |
Max. P | 0.660365 |
Location | 19,983,568 – 19,983,658 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 86.10 |
Mean single sequence MFE | -33.55 |
Consensus MFE | -21.86 |
Energy contribution | -22.60 |
Covariance contribution | 0.74 |
Combinations/Pair | 1.04 |
Mean z-score | -2.17 |
Structure conservation index | 0.65 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660365 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19983568 90 - 22407834 GUUACCGGUUGUUAUUCUUGCGCGUUUUGUUGUCAGUCGUCUGGCAAGAAUGAAAUGGCCA-----------------AGGAGCCAAGAAAAGCAGCUGUUGCUGCU (((.((((((.(((((((((((((......)))(((....)))))))))))))...)))).-----------------.))))).......((((((....)))))) ( -28.90) >DroSec_CAF1 166440 102 - 1 GUUACCGGUUGUUAUUCUUGCGCGUUUUGUUGUCAGU---CUGGCCAGAAUGAAAUGGCCAGCACGAGCACAUA--GUAGGAGCCAAGAAAAGCAGCUGUUGCUGCU ((...((((((((.((((((.((...(((((((..((---(((((((........))))))).))..))).)))--).....)))))))).))))))))..)).... ( -37.30) >DroSim_CAF1 168993 102 - 1 GUUACCGGUUGUUAUUCUUGCGCGUUUUGUUGUCAGU---CUGGCCAGAAUGAAAUGGCCAGCACGAGCACAUA--GUAGGAGCCAAGAAAAGCAGCUGUUGCUGCU ((...((((((((.((((((.((...(((((((..((---(((((((........))))))).))..))).)))--).....)))))))).))))))))..)).... ( -37.30) >DroEre_CAF1 164499 103 - 1 GUUACCGGUUCUUAUUCUGGCACGUUUUGUUGUCAGU---CGGGCAACAAUCAAAUGGCCAGCACG-GCACAUAUUGUAGGAGCCAAGAAAAGCAGCUGUUGCUGCU ......(((((((((.(((((.((((((((((((...---..)))))))...))))))))))....-.........)))))))))......((((((....)))))) ( -37.54) >DroYak_CAF1 165367 98 - 1 GUUACCGGUUCUUAUUCUUUCGCGUUUUGUUGUCAGU---CUGGCACCAAUCAAACGGCCAGCACGAGCACAU------GAAGCCAAGAAAAGCAGCUGUUGCUGCU .................((((..((((..((((..((---(((((............))))).))..))).).------.))))...))))((((((....)))))) ( -26.70) >consensus GUUACCGGUUGUUAUUCUUGCGCGUUUUGUUGUCAGU___CUGGCAAGAAUGAAAUGGCCAGCACGAGCACAUA__GUAGGAGCCAAGAAAAGCAGCUGUUGCUGCU ......((((.........((.((((((((((((((....)))))...)))))))))))..((....))............))))......((((((....)))))) (-21.86 = -22.60 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:10 2006