Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,074,509 – 2,074,620 |
Length | 111 |
Max. P | 0.683140 |
Location | 2,074,509 – 2,074,620 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 86.37 |
Mean single sequence MFE | -36.88 |
Consensus MFE | -29.39 |
Energy contribution | -31.43 |
Covariance contribution | 2.04 |
Combinations/Pair | 1.11 |
Mean z-score | -2.17 |
Structure conservation index | 0.80 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683140 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2074509 111 - 22407834 GAAGCAGUCUGGCUUGGACUGGCGGGGUCUGAGAAUCAGACUCUCAGAGCAGGAAACUAGGUUUCAGGUUAAUUAAAUUUUAUUCUAGUUGCCGUCCAGCCGGAAGAGGCG ...((..(((((((.((((.(((((((((((.....))))))))..........(((((((....(((((.....)))))...)))))))))))))))))))))....)). ( -43.50) >DroSec_CAF1 91513 111 - 1 GAAGCAGUCUGGCUUGGACUGGCGGGGUCUGAGAAUCGGGCUCUUAGAGCAGGAAACUAGGUUUCAGGUUAAUUAAAUUUUAUUCUAGUUGCCGUCCACCCGGAAGAGGCG ...((..(((((..(((((.(((((((((((.....))))))))..........(((((((....(((((.....)))))...))))))))))))))).)))))....)). ( -37.50) >DroSim_CAF1 90841 111 - 1 GAAGCAGUCUGGCUUGGACUGGCGGGGUCUGAGAAUCGGGCUCUUAGAGCAGGAAACUAGGUUUCAGGUUAAUUAAAUUUUAUUCUAGUUGCCGUCCAGCCGGAAGAGGCG ...((..(((((((.((((.(((((((((((.....))))))))..........(((((((....(((((.....)))))...)))))))))))))))))))))....)). ( -42.20) >DroEre_CAF1 93892 111 - 1 GAAGCAGUCUGGCUCGGACUGGCGGGGUCUGAGAACCGGGCUCUAAGAGCAGAAAACUAGGUUUCAGGUUAAUUAAAUUUUAUUCUAGUUGCCGUCCAGCCGGAAGAGGCG ...((..(((((((.((((.(((((((((((.....))))))))..........(((((((....(((((.....)))))...)))))))))))))))))))))....)). ( -42.20) >DroYak_CAF1 95286 111 - 1 GAAGCAGUCUGGCUUGGACUGUCGGGGUCUGAGAACCUGGCUCUUAGAGCACAAAACUAGGUUUCAGGUUAAUUAAAUUUUAUUCUAGUUGCCGUCCAGCCGGAAGAGGCG ...((..(((((((.((((.((...(.(((((((.......))))))).)....(((((((....(((((.....)))))...))))))))).)))))))))))....)). ( -36.10) >DroPer_CAF1 136898 90 - 1 GAAGUAGUCUGGCUG-------UUGGCUCU-------UGGCUCUUGGAGCA-AAAACUAGGUUUCAGGUUAAUUAAAUUUUAUUUUAGUUGCAGAAAAGCCGCAG------ .(((.((((......-------..))))))-------)((((((((((((.-........)))))))).((((((((......))))))))......))))....------ ( -19.80) >consensus GAAGCAGUCUGGCUUGGACUGGCGGGGUCUGAGAAUCGGGCUCUUAGAGCAGAAAACUAGGUUUCAGGUUAAUUAAAUUUUAUUCUAGUUGCCGUCCAGCCGGAAGAGGCG ...((..(((((((.((((.(((((((((((.....))))))))..........(((((((....(((((.....)))))...)))))))))))))))))))))....)). (-29.39 = -31.43 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:37 2006