Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,982,645 – 19,982,735 |
Length | 90 |
Max. P | 0.812266 |
Location | 19,982,645 – 19,982,735 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 90.68 |
Mean single sequence MFE | -17.76 |
Consensus MFE | -15.03 |
Energy contribution | -15.18 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.17 |
Mean z-score | -1.99 |
Structure conservation index | 0.85 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812266 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19982645 90 + 22407834 AAGAGAUUGCCGAGCCA---AAAAAUAAGAGGCAAAUAUCUUGUUUGCAUAUUUCUGCGUCAGCCAGAAAUAAUAAUUAAAAGCAAACCAACA ((((..(((((......---..........)))))...))))((((((.(((((((((....).))))))))(....)....))))))..... ( -19.09) >DroSec_CAF1 165534 90 + 1 AAGAGAUUGCCGAGCCA---AAAAAUGAGAGGCAAAUAUCUUGUUUGCAUAUUUCUGCGUCAGCCAGAAAUAAUAAUUAAAAGCAAACCAACA ((((..(((((...(((---.....)).).)))))...))))((((((.(((((((((....).))))))))(....)....))))))..... ( -19.70) >DroSim_CAF1 168063 90 + 1 AAGAGAUUGCCGAGCCA---AAAAAUGAGAGGCAAAUAUCUUGUUUGCAUAUUUCUGCGUCAGCCAGAAAUAAUAAUUAAAAGCAAACCAACA ((((..(((((...(((---.....)).).)))))...))))((((((.(((((((((....).))))))))(....)....))))))..... ( -19.70) >DroEre_CAF1 163589 88 + 1 AAGAGAUUGCCGAGCUA---AAAAAUGAGAGGCAAAUAUCUUGUUUGCAUAUUUCUGCUUCAGCCAGAAAUAAUAAUUAAAUGCAAACCAA-- ((((..(((((...((.---.......)).)))))...))))((((((((((((((((....).)))))))).........)))))))...-- ( -22.40) >DroYak_CAF1 164475 88 + 1 AAGAGAUUGUCGAGCCA---AAAAAUGAGAGGCAAAUAUAUUGUUUGCAUAUUUCUGCGUCAGCCAGAUAUAAUAAUUAAAAGCAAGCCCA-- .......((((..((..---......((((.((((((.....))))))...)))).......))..)))).....................-- ( -12.26) >DroAna_CAF1 166512 93 + 1 GAGAGAUUUCCGAGCUACAAAAAAGUGAGGGGAAAAAAGCUUGUUUGCAUAUUUCUGCGUCAGCCAGAAACAAUAAUUAAAAACAAACCCACA ......(..((..(((.......)))..))..).....((......))...(((((((....).))))))....................... ( -13.40) >consensus AAGAGAUUGCCGAGCCA___AAAAAUGAGAGGCAAAUAUCUUGUUUGCAUAUUUCUGCGUCAGCCAGAAAUAAUAAUUAAAAGCAAACCAACA ((((..(((((...................)))))...))))((((((.(((((((((....).))))))))..........))))))..... (-15.03 = -15.18 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:08 2006