Locus 7127

Sequence ID 2L_DroMel_CAF1
Location 19,981,258 – 19,981,370
Length 112
Max. P 0.621330
window11377

overview

Window 7

Location 19,981,258 – 19,981,370
Length 112
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 74.65
Mean single sequence MFE -21.07
Consensus MFE -2.22
Energy contribution -3.86
Covariance contribution 1.64
Combinations/Pair 1.19
Mean z-score -1.44
Structure conservation index 0.11
SVM decision value 0.18
SVM RNA-class probability 0.621330
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19981258 112 - 22407834
AAUGUGGCAUCAAAGGAAAGUU-UUAGCCUCUAAAACAUUUUAUUUGUGAAAAGAGGUGAGAUAAUGAAAGUUGGCAACUUUUAAACAAUG----UACAUAAAGUGUGUGCUAAAAG
....((((((((.......(((-(((.(((((...(((.......)))....)))))))))))..(((((((.....))))))).......----.........)).)))))).... ( -20.80)
>DroSec_CAF1 164158 104 - 1
AAGUUGGCAUCAAAGGAAAGUU-UUAGCCUCUAAAACAAUUUGUUGGUGAAAAGAAGUGUGAUAAUGAA--------ACUUUUAAACAAUG----UACAUAAAGUGUGUGCUAAAAG
..((((.((((((..((..(((-((((...)))))))..))..))))))...((((((...........--------))))))...))))(----(((((.....))))))...... ( -20.50)
>DroSim_CAF1 166684 113 - 1
AAGUUGGCAUCAAAGGAAAGUUUUUAGCCUCUAAAACAUUUUGUUGGUAAAAAGAAGAGUGAUAAUGGAAGUUGGCAACUCUUAAACAAUG----UACAUAAAGUGUGUGCUAAAAG
..((((..(((((..(((.(((((........))))).)))..)))))......((((((..((((....))))...))))))...))))(----(((((.....))))))...... ( -21.80)
>DroEre_CAF1 162224 104 - 1
AAUGUGGCAUUAAUAUAAAGUU-UUAGCCUUUAUCACAUUUAGUGGGUGACUAGAAGUGUGAUGACGAAAGUUGCCCACUUUUAAAUAUUG----UAUAUAAAGUGAGU--------
.....((((.............-........((((((((((..(((....))).))))))))))((....))))))((((((.........----.....))))))...-------- ( -25.54)
>DroYak_CAF1 163143 102 - 1
AAUGUGACAUCAAUGAAAAGUU-UUAGCCUAUAUUACAUUUUGUUGGUGAGAA--------------AAAGUUGGCAACUUUUAAAUAAUGUAAGUAUAUAAAGUGAGUGCUACAAA
.......((((((..(((.((.-.((.....))..)).)))..))))))...(--------------(((((.....))))))......((((.((((.........)))))))).. ( -16.70)
>consensus
AAUGUGGCAUCAAAGGAAAGUU_UUAGCCUCUAAAACAUUUUGUUGGUGAAAAGAAGUGUGAUAAUGAAAGUUGGCAACUUUUAAACAAUG____UACAUAAAGUGUGUGCUAAAAG
.......((((((..(((.(((.((((...))))))).)))..)))))).................................................................... ( -2.22 =  -3.86 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:07 2006