Locus 7121

Sequence ID 2L_DroMel_CAF1
Location 19,971,828 – 19,971,933
Length 105
Max. P 0.905764
window11364

overview

Window 4

Location 19,971,828 – 19,971,933
Length 105
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 96.29
Mean single sequence MFE -26.26
Consensus MFE -23.49
Energy contribution -23.57
Covariance contribution 0.08
Combinations/Pair 1.06
Mean z-score -1.52
Structure conservation index 0.89
SVM decision value 1.04
SVM RNA-class probability 0.905764
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19971828 105 + 22407834
CGGUUCUUCUGCUCAUUUAUUCCACAUAAUCGCGCUUAAUGUUCAGCAUUAAUUAAAUGGCUUCGAGCUCGCAUUACCCAGCACGGUAAAUGCGCAGGACACUGA
((((..((((((.(((((((..........((.(((((((((....((((.....))))((.....))..))))))...))).))))))))).)))))).)))). ( -24.60)
>DroSec_CAF1 154743 105 + 1
CGGUUCUUCUGCUCAUUUAUUCCACAUAAUCGCGCUUAAUGCUCAGCAUUAAUUAAAUGGCUUCGAGCUCGCAUUACUCAGCACGGAAAAUGCGCAGGACACUGA
((((..((((((.(((((..(((.................((((((((((.....))).)))..))))..((........))..)))))))).)))))).)))). ( -25.90)
>DroSim_CAF1 157263 105 + 1
CGGUUCUUCUGCUCAUUUAUUCCACAUAAUCGCGCUUAAUGCUCAGCAUUAAUUAAAUGGCUUCGAGCUCGCAUUACCCAGCAGGGAAAAUGCGCAGGACACUGA
((((..((((((.(((((.............(((.(((((((...)))))))......(((.....))))))....(((....))).))))).)))))).)))). ( -28.10)
>DroEre_CAF1 152881 105 + 1
CGGUCCUUCUGCUCAUUUAUUCCCCAUAUUCGCGCUUAAUGCUCAGCAUUAAUUAAAUGGCUUCGAGCUCGCAUUACCCAGCCCGGAAAAUGCGCAGGACCCUGA
.((((((...((((.................(.((.....)).)((((((.....))).)))..)))).((((((..((.....))..)))))).)))))).... ( -26.40)
>DroYak_CAF1 153691 105 + 1
CGGUUCUUCUGCUCAUUUAUUCCACAUAAUCGCGCUUAAUGCUCAGCAUUAAUUAAAUGGCUUCGAGCUCGCAUUACCCAGCAUGGAAAAUGCGCAGGACACUGA
((((..((((((.(((((..((((.....(((.(((((((((...)))))).......)))..)))(((.(......).))).))))))))).)))))).)))). ( -26.31)
>consensus
CGGUUCUUCUGCUCAUUUAUUCCACAUAAUCGCGCUUAAUGCUCAGCAUUAAUUAAAUGGCUUCGAGCUCGCAUUACCCAGCACGGAAAAUGCGCAGGACACUGA
((((..((((((.(((((..(((......(((.(((((((((...)))))).......)))..)))(((.(......).)))..)))))))).)))))).)))). (-23.49 = -23.57 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:55 2006