Locus 7120

Sequence ID 2L_DroMel_CAF1
Location 19,971,045 – 19,971,147
Length 102
Max. P 0.665456
window11363

overview

Window 3

Location 19,971,045 – 19,971,147
Length 102
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 87.04
Mean single sequence MFE -32.66
Consensus MFE -25.48
Energy contribution -26.28
Covariance contribution 0.80
Combinations/Pair 1.07
Mean z-score -1.63
Structure conservation index 0.78
SVM decision value 0.28
SVM RNA-class probability 0.665456
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19971045 102 + 22407834
AGCUGGGCAGGAUACUCGAGUCCUGUGCG-----UCGCC--AAC--UCUCCACAUUUAUAGGUGGAACGUGACCGUAAUCAGCCGUUUUACACGCAAAUUUUCCAGCCCCG
.((((((((((((......)))))))(((-----((((.--...--..(((((........)))))..))))).((((.........))))..)).......))))).... ( -32.20)
>DroSec_CAF1 153952 102 + 1
AGCUGGGCAGGAUACUCGAGUCCUGUGCG-----UCGCC--AAC--UCUCCACUUUUAUAGGUGGAACGUGACCGUAAUAAGCCGUUUUACACGCAAAUUUGCCAGCCCCG
.((((((((((((......)))))))(((-----((((.--...--..(((((((....)))))))..))))).((((.........))))..)).......))))).... ( -34.40)
>DroSim_CAF1 156495 102 + 1
AGCUGGGCAGGAUACUCGAGUCCUGUGCG-----UCGCC--AAC--UCUCCACUUUUAUAGGAGGAACGUGACCGUAAUAAGCCGUUUUACACGCAAAUUUGCCAGCCCCG
.((((((((((((......)))))))(((-----((((.--...--(((((.........)))))...))))).((((.........))))..)).......))))).... ( -32.50)
>DroEre_CAF1 152202 104 + 1
AGCUGGGCAGGAUACGCGAAUCCUGAG-----CUCUCCC--UACUAUCUCCACUUUUAUAGGUGGAACGUGACCGUUACAAGCCGUUUUACACGCAAAUUUGCCAACCCCA
....(((((((((......)))))).(-----(......--.......(((((((....))))))).((((((.((.....)).))....)))).......))....))). ( -23.90)
>DroYak_CAF1 152889 110 + 1
AGCUGGGCAGGAUACUCGAAUCCUGUGCGUGGCUCUCUCGGUGC-CUCUCUACUUUUAUAGGUGGAACGUGACCGUUAUAAGCCGUUUUACACGCAAAUUUGCCAGCCCCU
.((((((((((((......)))))))((((((((....((((..-(..(((((((....)))))))..)..)))).....))))(.....))))).......))))).... ( -40.30)
>consensus
AGCUGGGCAGGAUACUCGAGUCCUGUGCG_____UCGCC__AAC__UCUCCACUUUUAUAGGUGGAACGUGACCGUAAUAAGCCGUUUUACACGCAAAUUUGCCAGCCCCG
.((((((((((((......)))))))(((...................(((((((....)))))))..((((.((........))..)))).))).......))))).... (-25.48 = -26.28 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:54 2006