Locus 7119

Sequence ID 2L_DroMel_CAF1
Location 19,970,487 – 19,970,604
Length 117
Max. P 0.625936
window11362

overview

Window 2

Location 19,970,487 – 19,970,604
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.98
Mean single sequence MFE -26.16
Consensus MFE -3.12
Energy contribution -4.12
Covariance contribution 1.00
Combinations/Pair 1.15
Mean z-score -1.75
Structure conservation index 0.12
SVM decision value 0.19
SVM RNA-class probability 0.625936
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19970487 117 - 22407834
CAAAAUGAGGAGUAAAACUAAAGGCUGUUUCAAUUUAACUACUCCGAACUAUUAGAUCCUCAGGCGAGUCUUUAUCGAGUUACACAG---GUAGGUAGGUAACUACCUGAAUUAAACUGC
........((((((((((........)))).........)))))).((((..((((..(((....)))..))))...))))...(((---((((........)))))))........... ( -26.20)
>DroSec_CAF1 153408 112 - 1
CGAAAUGAGGAGUAAAACUAAAGGCUGUUUCCAUUUAACAACUCUGAACUAU-AGAUCCUCAGGCGAGUCUUUAUCGAGUUACACAG---GUA----GGCAACUACCUGAAUUAAACUUC
((...((((((..........(((.((((.......)))).).)).......-...))))))..))..........(((((...(((---(((----(....))))))).....))))). ( -27.95)
>DroSim_CAF1 155983 113 - 1
CGAAAUAAGGAGUGAAACUAAAGACUGUUUCCAUUUAACAACUCUGAACUAUUAGAUCCUCAGGCGAGUCUUUAUCGAGUUACACAG---GUA----GGCAACUACCUGAAAUAAACUUC
........((((((((((........))))).........))))).((((..((((..(((....)))..))))...))))...(((---(((----(....)))))))........... ( -27.70)
>DroEre_CAF1 151692 103 - 1
-------------GAAACUAAUGGCUGUUUUAAUUUAACAACUGGGAGCCAUUAGAUCCAUAGGCGAGGCUUUAUCUAGUUACCCAGCCCACU----GGCAACUAGCUGAAUGAAACUGC
-------------....(((((((((.((..............)).)))))))))........((.((.(((((.((((((..((((....))----)).)))))).)))).)...)))) ( -25.04)
>DroYak_CAF1 152383 111 - 1
CGAUUUAAAAA--AAAACUAAUGGCUGUUUCAGUUUAACAACUGGAAACUAUUUGAUCCAAAGGCGAGAGUUUAUCUAGUUACACAG---AUA----GGCAACUACCUGAAUGAAACUGC
...........--..........((.((((((.......(((((((((((.((((.((....))))))))))..)))))))...(((---.((----(....))).)))..)))))).)) ( -23.90)
>consensus
CGAAAUAAGGAGUAAAACUAAAGGCUGUUUCAAUUUAACAACUCGGAACUAUUAGAUCCUCAGGCGAGUCUUUAUCGAGUUACACAG___GUA____GGCAACUACCUGAAUUAAACUGC
..........................(((...(((((.........((((..((((..(((....)))..))))...))))................(....)....)))))..)))... ( -3.12 =  -4.12 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:53 2006