| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,967,316 – 19,967,433 |
| Length | 117 |
| Max. P | 0.713354 |
| Location | 19,967,316 – 19,967,433 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.85 |
| Mean single sequence MFE | -36.83 |
| Consensus MFE | -29.03 |
| Energy contribution | -29.40 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.713354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19967316 117 - 22407834 GACCUCCACACAGCCAGAGCCAUUAUCGAGGAGCUGCGCUCCAAGGUGCGCUUCCAGACGGAGCACAUCAUGAAGUGGCGCAAAGCGUAUGCCAUGCAGGUGAGGAUAUCCUUCUAU--- ((..(((.(((.......((((((.(((.(((((...)))))..((((.(((((.....))))).)))).)))))))))(((..((....))..)))..))).)))..)).......--- ( -40.10) >DroGri_CAF1 191481 107 - 1 GAUUUGCACACAGCACGCGCCAUCAUCGAGGAGUUGCGCUCCAAGGUUCGCUUCCAAACCGAGCACAUUAUGAAGUGGCGCAAGGCCUACGCUAUGCAGGUGGGUUG------------- ....(((.....))).(((((((..(((.((((.....))))...(((((.........)))))......))).)))))))..(((((((.((....))))))))).------------- ( -34.40) >DroWil_CAF1 235217 119 - 1 GAUUUGCAUACAGCCCGGGCCAUAAUCGAGGAAUUGCGCUCCAAGGUGCGUUUCCAGACCGAGCACAUCAUGAAAUGGCGCAAGGCGUAUGCCAUGCAGGUGAGUU-GUACCACUAAUUA .....((((((.(((.(.(((((..(((.((((.((((((....)))))).)))).....((.....)).))).))))).)..)))))))))......((((....-.))))........ ( -36.60) >DroYak_CAF1 149227 101 - 1 GACCUCCAUACAGCCAGAGCCAUUAUUGAGGAGCUGCGCUCCAAGGUGCGCUUCCAGACGGAGCACAUCAUGAAGUGGCGCAAGGCGUAUGCCAUGCAGGU------------------- ............(((...((((((.....(((((...)))))..((((.(((((.....))))).))))....))))))(((.(((....))).))).)))------------------- ( -38.40) >DroAna_CAF1 158661 111 - 1 GAUUUGCACACAGCCAGAGCCAUCAUCGAGGAGCUUCGUUCCAAGGUGCGAUUCCAAACGGAGCACAUCAUGAAGUGGAGGAAGGCUUAUGCCAUGCAGGUAAACUAAU------GU--- .(((((((....((..(((((.((.((..(((((...)))))..((((.(.((((....))))).))))........)).)).)))))..))..)))))))........------..--- ( -30.70) >DroPer_CAF1 251493 107 - 1 GACCUGCACACAGCAAGGGCCAUCAUCGAGGAGCUGCGCUCCAAAGUGCGCUUUCAAACAGAGCACAUCAUGAAGUGGCGCAAGGCGUACGCCAUGCAGGUGAGUCC------------- .(((((((........(.((((((((.(((((((...)))))...((((.((.......)).)))).))))))..)))).)..(((....))).)))))))......------------- ( -40.80) >consensus GACCUGCACACAGCCAGAGCCAUCAUCGAGGAGCUGCGCUCCAAGGUGCGCUUCCAAACGGAGCACAUCAUGAAGUGGCGCAAGGCGUAUGCCAUGCAGGUGAGUU______________ .(((((((........(.(((((......(((((...)))))..((((.(((((.....))))).)))).....))))).)..(((....))).)))))))................... (-29.03 = -29.40 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:51 2006