Locus 7116

Sequence ID 2L_DroMel_CAF1
Location 19,966,350 – 19,966,464
Length 114
Max. P 0.808875
window11359

overview

Window 9

Location 19,966,350 – 19,966,464
Length 114
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 90.09
Mean single sequence MFE -23.94
Consensus MFE -18.74
Energy contribution -20.26
Covariance contribution 1.52
Combinations/Pair 1.10
Mean z-score -1.78
Structure conservation index 0.78
SVM decision value 0.64
SVM RNA-class probability 0.808875
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19966350 114 + 22407834
CUAAGAAUAUGGGAAUUCCCUCCAUUGGCUCAACAUUAUCCUGAAAUUUAAAAUUUAAGUGCAACAUUUUGCAGUUUAAUCUUUUACUUUUCAGUUACCUGGGUUUUUCCGUUG
........(((((((..(((.....((......)).....((((((..(((((.((((((((((....))))).)))))..)))))..))))))......)))..))))))).. ( -25.30)
>DroSec_CAF1 149297 114 + 1
CUAAGAAAAUGGGAAUUCCCUCCAUUGGCUCAACAUAAUCCUGAAAUUUAAAAUUUAAGUGCAACAUUUUGCAGUUUAAUGUUUUUAUUUUCAGCUACCUGUGUUUUUCCGUUG
.......((((((((...((......))...((((((...((((((...(((((..((.(((((....))))).))....)))))...)))))).....)))))))))))))). ( -22.90)
>DroSim_CAF1 151875 114 + 1
CUAAGAAAAUGGGAAUUCCCUCCAUUGGCUCAACAUAAUCCUGAAAUUUAAAAUUUAAGUGCAACAUUUUGCAGUUUAAUCUUUUUAUUUUCAGUUACCUGGGUUUUUCCGUUG
.......((((((((..(((.....((......)).....((((((..(((((.((((((((((....))))).)))))...))))).))))))......)))..)))))))). ( -26.10)
>DroEre_CAF1 147670 114 + 1
CUAAGAAAAUGGGAAUUCCCUCCACAGGCCCAACAUUUUCCUGAAAUUUAAAGUUUAAGUGCAACAUUUGGCAAUUGAAACCUUUACUUCUCAGUUACCUGGGUCUUUCCGUUG
....((((..(((....)))......((((((........((((.(..((((((((((.(((........))).)))))..)))))..).)))).....))))))))))..... ( -23.52)
>DroYak_CAF1 148227 114 + 1
CUAAGAAAAUGGGAAUUCCCUCCAUAGGCUCAACAUUUUCCUGAAAUUUAAAAUUUAAGUGCAACAUUCCGCAAUUCAAUCCGUUAGUUAUCAGUUACCUGGGUUUUCCCGUUG
.......((((((((..(((......(......)......((((...((((........(((........)))..........))))...))))......)))..)))))))). ( -21.87)
>consensus
CUAAGAAAAUGGGAAUUCCCUCCAUUGGCUCAACAUUAUCCUGAAAUUUAAAAUUUAAGUGCAACAUUUUGCAGUUUAAUCUUUUAAUUUUCAGUUACCUGGGUUUUUCCGUUG
.......((((((((..(((......(......)......((((((.((((((...((.(((........))).)).....)))))).))))))......)))..)))))))). (-18.74 = -20.26 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:50 2006