Locus 7115

Sequence ID	2L_DroMel_CAF1
Location	19,961,957 – 19,962,069
Length	112
Max. P	0.998426

overview

Window 7

Location	19,961,957 – 19,962,069
Length	112
Sequences	5
Columns	112
Reading direction	forward
Mean pairwise identity	91.96
Mean single sequence MFE	-28.43
Consensus MFE	-25.42
Energy contribution	-25.06
Covariance contribution	-0.36
Combinations/Pair	1.23
Mean z-score	-2.20
Structure conservation index	0.89
SVM decision value	3.10
SVM RNA-class probability	0.998426
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19961957 112 + 22407834
UGUAUGAAUAGCUGAACGACAACCUCGUCAGCUUCCGAUUCGAAUUCUUUGCUGCCUGCAAUCGAAAUGAUGCUUUCCAGUUCCUCAAGAGCAUCCUCCAGUCUGUUCAGCU
.........(((((((((((....(((........)))(((((.....((((.....)))))))))..((((((((..((...))..)))))))).....))).)))))))) ( -29.80)
>DroSec_CAF1 144853 112 + 1
UGUAUGAAUAGCUGGACCACAACCUCAUCAGCUUCCGAUUCGAAUUCUUUGCUGCCUGCAAUCGAAAUUAUGCUUUCCAGUUCCUCAAGGGCAUCCUCCAGUCUAUUCAGCU
....((((((((((((......................(((((.....((((.....)))))))))...(((((((..((...))..)))))))..))))).)))))))... ( -25.70)
>DroSim_CAF1 147418 112 + 1
UGUAUGAAUAGCUGGACCACAACCUCGUCAGCUUCCGAUUCAAAUUCUCUCUUACAUGCAAUCGAAAUGAUGCUUUCCAGUUCCUCAAGGGCAUCCUCCAGUCUAUUCAGCU
....((((((((((((...................(((((((..............)).)))))....((((((((..((...))..)))))))).))))).)))))))... ( -24.94)
>DroEre_CAF1 143210 112 + 1
UGCAUGAACAGCUGGACCACAACCUCGUCAGCUUCCGAUUCGAAUUCCUUGCUGCCUGCAAUCGAAAUGAUGCUUUCCAAUUCCUCAAGAGCGUCUUCUAGUCUGUUCAGCU
.((.((((((((((((........(((........)))(((((.....((((.....)))))))))..((((((((...........)))))))).))))).))))))))). ( -31.40)
>DroYak_CAF1 143772 112 + 1
UGUAUGAAUAGCUGGACCACAACCUCGUCAGCUUCUGAUUCGAAUUCUUUGCUGCCUGCAAUCGAAAUGAUGCUUUCCAAUUCCUCAAGAGCGUCUUCCAGUCUGUUCAGCU
....((((((((((((...........((((...))))(((((.....((((.....)))))))))..((((((((...........)))))))).))))).)))))))... ( -30.30)
>consensus
UGUAUGAAUAGCUGGACCACAACCUCGUCAGCUUCCGAUUCGAAUUCUUUGCUGCCUGCAAUCGAAAUGAUGCUUUCCAGUUCCUCAAGAGCAUCCUCCAGUCUGUUCAGCU
.((.((((((((((((......................(((((.....((((.....)))))))))..((((((((...........)))))))).))))).))))))))). (-25.42 = -25.06 +  -0.36)

alignment

secondary structure

dotplot

Window 8

Location	19,961,957 – 19,962,069
Length	112
Sequences	5
Columns	112
Reading direction	reverse
Mean pairwise identity	91.96
Mean single sequence MFE	-32.42
Consensus MFE	-25.94
Energy contribution	-25.86
Covariance contribution	-0.08
Combinations/Pair	1.21
Mean z-score	-1.57
Structure conservation index	0.80
SVM decision value	0.40
SVM RNA-class probability	0.722550
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19961957 112 - 22407834
AGCUGAACAGACUGGAGGAUGCUCUUGAGGAACUGGAAAGCAUCAUUUCGAUUGCAGGCAGCAAAGAAUUCGAAUCGGAAGCUGACGAGGUUGUCGUUCAGCUAUUCAUACA
((((((((....(((((((((((.((.((...)).)).)))))).)))))......((((((..((..((((...))))..))......))))))))))))))......... ( -33.00)
>DroSec_CAF1 144853 112 - 1
AGCUGAAUAGACUGGAGGAUGCCCUUGAGGAACUGGAAAGCAUAAUUUCGAUUGCAGGCAGCAAAGAAUUCGAAUCGGAAGCUGAUGAGGUUGUGGUCCAGCUAUUCAUACA
...(((((((.((.((((....)))).))...(((((...(((((((((..((((.....)))).........(((((...)))))))))))))).)))))))))))).... ( -34.30)
>DroSim_CAF1 147418 112 - 1
AGCUGAAUAGACUGGAGGAUGCCCUUGAGGAACUGGAAAGCAUCAUUUCGAUUGCAUGUAAGAGAGAAUUUGAAUCGGAAGCUGACGAGGUUGUGGUCCAGCUAUUCAUACA
...(((((((.(((((..((..(((((.((..((....))..)).((((((((.((.((........)).)))))))))).....)))))..))..)))))))))))).... ( -31.60)
>DroEre_CAF1 143210 112 - 1
AGCUGAACAGACUAGAAGACGCUCUUGAGGAAUUGGAAAGCAUCAUUUCGAUUGCAGGCAGCAAGGAAUUCGAAUCGGAAGCUGACGAGGUUGUGGUCCAGCUGUUCAUGCA
.(((((((((.((.......(((((((...((((((((.......)))))))).)))).)))..(((...(((.(((........)))..)))...)))))))))))).)). ( -33.50)
>DroYak_CAF1 143772 112 - 1
AGCUGAACAGACUGGAAGACGCUCUUGAGGAAUUGGAAAGCAUCAUUUCGAUUGCAGGCAGCAAAGAAUUCGAAUCAGAAGCUGACGAGGUUGUGGUCCAGCUAUUCAUACA
...((((.((.(((((..(((..((((.(.((((((((.......)))))))).)...((((......(((......))))))).))))..)))..))))))).)))).... ( -29.70)
>consensus
AGCUGAACAGACUGGAGGAUGCUCUUGAGGAACUGGAAAGCAUCAUUUCGAUUGCAGGCAGCAAAGAAUUCGAAUCGGAAGCUGACGAGGUUGUGGUCCAGCUAUUCAUACA
...(((((((.(((((..(((.(((((...........(((.((..(((((((((.....)))).....)))))...)).)))..))))).)))..)))))))))))).... (-25.94 = -25.86 +  -0.08)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:49 2006