| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,951,046 – 19,951,154 |
| Length | 108 |
| Max. P | 0.682660 |
| Location | 19,951,046 – 19,951,154 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.92 |
| Mean single sequence MFE | -38.24 |
| Consensus MFE | -22.62 |
| Energy contribution | -22.87 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.682660 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19951046 108 + 22407834 AACCCUUGGGACUGGCCUCGUUGGCCACUCAACCUGCUCCUCCCCUGCC------G------AAUAGCAAGCAGAGCAGUCCCGCCAAGACCGUCACCCUCAUAGACAAUGCCAAGCCCA ......((((..((((.((.(((((........((((((....(.(((.------.------....))).)..))))))....)))))))..(((.........)))...))))..)))) ( -29.40) >DroVir_CAF1 203201 120 + 1 AACCACUGGGCUUGGCCGCCUUGGCCACGCAGCCGGCACCACCGCUGCCCGUAGCGAAUGCGUCCAGCAAGCAGAGCAGUCCGGCAAAGACGGUGACGCUGAUAGACAAUGCCAAGCCCA .......(((((((((.((....))((.((.(((((.((....((((..((((.....))))..))))..((...)).)))))))......(....))))).........))))))))). ( -48.00) >DroPse_CAF1 207484 108 + 1 AGCCGCUGGGUCUGGCGGCCCUGGCCACCCAACCGGCGCCUCCUUUGCC------U------AACAGCAAGCAGGGCAGUCCCGCCAAGACCCUGACGCUGAUCGACAACGCCAAGCCCA ....((((((((((((((..((.(((........)))((((..(((((.------.------....)))))..))))))..))))).))))))((.((.((.....)).)).)))))... ( -42.40) >DroWil_CAF1 212644 108 + 1 AACCCUUGGGUCUGGCUGCUUUGGCCACCCAACCGCCUCCGCCGUUGCC------A------GGCAGCAAACAAAGUAGUCCGGCAAAGACUGUCACUCUGAUAGACAAUGCCAAGCCUA ....((((((((.(((((((((((((...((((.((....)).))))..------.------)))......)))))))))).))).....(((((.....)))))......))))).... ( -35.40) >DroAna_CAF1 140780 108 + 1 AGCCUCUGGGCCUGGCAGCUCUGGCCACUCAGCCGCCACCUCCUCUUCC------A------AACAGCAAACAGGGCAGUCCGGCCAAGACGGUCACUCUGAUCGACAACGCCAAGCCUA ......(((((.((((...(((((((.....((.(((.......((...------.------...)).......))).))..)))).)))(((((.....))))).....)))).))))) ( -31.84) >DroPer_CAF1 226626 108 + 1 AGCCGCUGGGUCUGGCGGCCCUGGCCACCCAACCGGCGCCUCCUUUGCC------U------AACAGCAAGCAGGGCAGUCCCGCCAAGACCCUGACGCUGAUCGACAACGCCAAGCCCA ....((((((((((((((..((.(((........)))((((..(((((.------.------....)))))..))))))..))))).))))))((.((.((.....)).)).)))))... ( -42.40) >consensus AACCCCUGGGUCUGGCCGCCCUGGCCACCCAACCGGCACCUCCUCUGCC______A______AACAGCAAGCAGAGCAGUCCCGCCAAGACCGUCACGCUGAUAGACAACGCCAAGCCCA ......(((((.((((.(((((((((........)))........(((..................)))..)))))).(((.......)))...................)))).))))) (-22.62 = -22.87 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:46 2006