| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,940,983 – 19,941,088 |
| Length | 105 |
| Max. P | 0.522983 |
| Location | 19,940,983 – 19,941,088 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 79.06 |
| Mean single sequence MFE | -31.92 |
| Consensus MFE | -14.28 |
| Energy contribution | -14.70 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.45 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522983 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19940983 105 + 22407834 AGUUACUGGAGUUUG-GGGCGUGACCGAGUUGAGGCCGAGUUCGUUGGACCGGCGGCUUCAAUUUAUGAAUCCCAGGCUCAAUUAAAAAUGAUUGAUGCAGUCUUA ....(((((((((((-((.(((((....((((((((((.(((.....)))...)))))))))))))))...))))))))).(((((......))))).)))).... ( -36.80) >DroSec_CAF1 116829 105 + 1 AGUUACUGGAGUUUG-GGGCGUGACUGAGUUGAGGCCGAGUUCGUUGGACCGGCGGCUUCAAUUUAUGAAUCCCAGGCUCAAUUAAAAAUGAUUGAUGCAGUCUUA ....(((((((((((-(((......(((((((((((((.(((.....)))...)))))))))))))....)))))))))).(((((......))))).)))).... ( -37.40) >DroEre_CAF1 122496 98 + 1 AGUUAGUGGAGUUUG-GGGCGUGGC-------UGGCCGAGUUCGUUGGACCAGCGGCUUCAAUUUAUGAAUCCCGGGCUCAAUUAAAAAUGAUUGAUGCAGUCUUA ..(((((.(((((((-(((.((.((-------(((((((.....)))).))))).))((((.....)))))))))))))).)))))....(((((...)))))... ( -35.20) >DroYak_CAF1 122937 98 + 1 AGUUACUAGAGUUUG-GGGCGUGUC-------AGGCCGAGUUCGUUGGACCAGCGGCAUCAAUUUAUGAAUCCCGGGCUCAAUUAAAAAUGAUUGAUGCAGUCUUA ........(((((((-((.((((..-------..((((.(((.....)))...)))).......))))...)))))))))..........(((((...)))))... ( -26.20) >DroAna_CAF1 131204 99 + 1 AGUUAGUGGGAUCUGAGGGAGUGGC-------AGGUUGAGUUCGUUGGACGAACAGCUUCAAUUUAUGAAUCCCGGCUUCAAUUAAAAAUGAUUGAUGCUGGUUUA ........(((((...((((.....-------((((((((((((.....)))))....))))))).....))))(((.(((((((....))))))).)))))))). ( -26.40) >DroPer_CAF1 212548 91 + 1 AUCAUGUGGAUUCCA-GGGCGUGUC-------CCGUGGAGUUCAUUGGACG------CUCAAUGAAUGAAUCCAUGCUUCAAUUAAAAAUGAUUGAUGCCACCAU- .....((((((((((-..(.(((((-------(.(((.....))).)))))------).)..))...))))))))((.(((((((....))))))).))......- ( -29.50) >consensus AGUUACUGGAGUUUG_GGGCGUGAC_______AGGCCGAGUUCGUUGGACCAGCGGCUUCAAUUUAUGAAUCCCGGGCUCAAUUAAAAAUGAUUGAUGCAGUCUUA ........(((((((.(((...............((((.(((.....)))...)))).(((.....))).)))))))))).......................... (-14.28 = -14.70 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:44 2006