| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,939,878 – 19,939,990 |
| Length | 112 |
| Max. P | 0.500000 |
| Location | 19,939,878 – 19,939,990 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 89.73 |
| Mean single sequence MFE | -32.34 |
| Consensus MFE | -23.14 |
| Energy contribution | -24.38 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19939878 112 - 22407834 GAAGUGCUCGUGGAGUGAGAAGUGGCAAUUGUGACUGCUCUGGACAGUUGCUGUUGUUUUUAGCGUUGCGUGAAUUGGCUGUAAUUGUUUUGAUUGCAGUUCAUGGUGUGCU ..((..(((((((.((.(((((..(((...(..(((((....).))))..))))..))))).)).............(((((((((.....))))))))))))))).)..)) ( -33.10) >DroSec_CAF1 115757 112 - 1 GAAGUGCUCGUGGAGUGAGAAGUGGCAAUUGUGACUGCUCUGGACAGUUGCUGUUGUUUUUAGCGCUGCGUGAAUUGGCUGUAAUUGUUUUGAUUGCAGUUCAUGGUGUGCU ..((..(((((((((((..(((.((((((.(..(((((....).))))..).)))))))))..))))..........(((((((((.....))))))))))))))).)..)) ( -35.00) >DroEre_CAF1 121352 112 - 1 GAAGUGCUCGAGGAGUGAGAAGUGCCAAUUGUGACUGCUCUGGACAGUUGCUGUUGUUUUUAGCGCUGCGUGAAUUGGCUGUAAUUGUUUUGAUUGCAGUUCAUGGUGUGCU ..((..(.(....((((..(((...((((.(..(((((....).))))..).))))..)))..)))).(((((....(((((((((.....))))))))))))))).)..)) ( -32.50) >DroYak_CAF1 121779 112 - 1 GAAGUGCUCGAGGAGUGAGAAGUGGCAAUUGUGACUGCUCUGGACAGUUGCUGUUGUUUUUAGCGCUGCGUGAAUUGGCUGUAAUUGUUUUGAUUGCAGUUCAUGGUGUGCU ..((..(.(....((((..(((.((((((.(..(((((....).))))..).)))))))))..)))).(((((....(((((((((.....))))))))))))))).)..)) ( -34.50) >DroAna_CAF1 129938 100 - 1 GAAGUGACUGCGAAGUAA-------GAACUGUGAC---UCUGGUCUG--GUUGCUGUUUUUAGCGCUGCGUGAAUUGGCUGUAAUUGUUUUGAUUGCAGUUCAUGGUGUUUU .........(((...(((-------((((.(..((---(.......)--))..).))))))).)))..(((((....(((((((((.....))))))))))))))....... ( -26.60) >consensus GAAGUGCUCGAGGAGUGAGAAGUGGCAAUUGUGACUGCUCUGGACAGUUGCUGUUGUUUUUAGCGCUGCGUGAAUUGGCUGUAAUUGUUUUGAUUGCAGUUCAUGGUGUGCU ......((((.....))))....((((((.(..((((.......))))..).))))))...(((((..(((((....(((((((((.....))))))))))))))..))))) (-23.14 = -24.38 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:43 2006