Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,067,477 – 2,067,570 |
Length | 93 |
Max. P | 0.900326 |
Location | 2,067,477 – 2,067,570 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 81.45 |
Mean single sequence MFE | -32.07 |
Consensus MFE | -21.79 |
Energy contribution | -22.77 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.15 |
Mean z-score | -2.63 |
Structure conservation index | 0.68 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.900326 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2067477 93 - 22407834 GUC------------GCUCCUGCGGGGG-------AAAGCAAAAAGUUGUGGCCAAAGUGGUUACAAAUCAAAUCAAAAGACCCGGCAAGAUGAAUGGUUGGCAGGAGGG-----GC (((------------.((((((((((..-------...........((((((((.....))))))))..............)))(((..........))).))))))).)-----)) ( -31.33) >DroSec_CAF1 84667 93 - 1 GUC------------GCUCCUGCGGGGG-------AAAGCAAAAAGUUGUGGCCAAAGUGGUUACAAAUCAAAUCAAAAGACCCGGCAAGAUGAAUGGGUGGCAGGAGGG-----GC (((------------.(((((((.....-------...........((((((((.....)))))))).............(((((..........))))).))))))).)-----)) ( -32.60) >DroSim_CAF1 83905 93 - 1 GUC------------GCUCCUGCGGGGG-------AAAGCAAAAAGUUGUGGCCAAAGUGGUUACAAAUCAAAUCAAAAGACCCGGCAAGAUGAAUGGGUGGCAGGAGGG-----GC (((------------.(((((((.....-------...........((((((((.....)))))))).............(((((..........))))).))))))).)-----)) ( -32.60) >DroEre_CAF1 86998 92 - 1 GUC------------GCUCCAGCGGGGG-------GA-GGAAAAAGUUGUGGCCAAAGUGGUUACAAAUCAAAUCAAAAGACCCGGCAAGAUGAAUGGGUGGAAGGAGGG-----GC (((------------.((((.((.(((.-------..-.((.....((((((((.....))))))))......))......))).))...((......))....)))).)-----)) ( -27.40) >DroYak_CAF1 88215 105 - 1 GUCGGUCGGUCGGUUGCUCCUGCGGGGC-------GAAGCAAAAAGUUGUGGCCAAAGUGGUUACAAAUCAAAUCAAAAGACCCGGCAAGAUGAAUGGGUGAAGGGAGGG-----GC (((((((.((...(((((((...)))))-------)).))......((((((((.....))))))))............)).))))).......................-----.. ( -27.20) >DroAna_CAF1 82154 117 - 1 GUCGGCCGAGGAGGCGGAGCUGCGGGCCGGGGCCUGGAGUAAAAAGUUGUGGCCAAAGUGGUUACAAAUCAAAUCAAAAGACCCAGGCAGAUGAGUGGUGGGCAGCGGGGAAAGGAC .((.(((.....))).))(((((..((((..((((((.((......((((((((.....)))))))).............)))))))).......))))..)))))........... ( -41.31) >consensus GUC____________GCUCCUGCGGGGG_______AAAGCAAAAAGUUGUGGCCAAAGUGGUUACAAAUCAAAUCAAAAGACCCGGCAAGAUGAAUGGGUGGCAGGAGGG_____GC ................(((((((.......................((((((((.....)))))))).............(((((..........))))).)))))))......... (-21.79 = -22.77 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:34 2006