Locus 7108

Sequence ID 2L_DroMel_CAF1
Location 19,927,771 – 19,927,877
Length 106
Max. P 0.899406
window11348

overview

Window 8

Location 19,927,771 – 19,927,877
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.93
Mean single sequence MFE -25.00
Consensus MFE -13.14
Energy contribution -13.41
Covariance contribution 0.28
Combinations/Pair 1.11
Mean z-score -2.28
Structure conservation index 0.53
SVM decision value 1.01
SVM RNA-class probability 0.899406
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19927771 106 - 22407834
GUCGAAGCCUCCAC--AAC----GGGCGUCUGUCAAUAAA-AAAUACUCGUAAUACAAA-AAG------CCAAUGGCAAAUAAUAUGCGGCAAAACUGCUGACAGACUGGCGUUGCAUGU
((((..((((....--...----))))((((((((.....-..................-..(------((...))).........((((.....))))))))))))))))......... ( -27.10)
>DroPse_CAF1 176548 106 - 1
GUUGAAGCCUCCACACAACUGUGUGGCGUCUGUCAAUAAUGAAAUAA---UAAAAGAAAAAAGCCAGAUCCAAUGGCAAAAAAAAU---------AUGCUGACAGACUGCCAAUAGAU--
((((..((..((((((....)))))).((((((((...((......)---)...........((((.......)))).........---------....)))))))).))))))....-- ( -26.30)
>DroEre_CAF1 109291 107 - 1
GUCGAAGCCUCCAC--AAC----GGGCAUCUGUCAAUAAA-AAAUACUCGUAAUACAAAAAAG------CCAAUGGCAAAUAAUAUGCGGCAAAACUGCUGACAGACUGGCGUUGGAUGU
(((.((((((((..--...----)))..(((((((.....-.....................(------((...))).........((((.....)))))))))))..))).)).))).. ( -24.20)
>DroYak_CAF1 109815 106 - 1
GUCGAAGCCUCCAC--AAC----GGGCAUCUGUCAAUAAA-AAAUACUCGUAAUACAAAAAAG------CCAAUGGCAAAUAAUAUGCGCC-AAACUGCUGACAGACUGGCAUUGGAUGU
(((.((((((((..--...----)))..((((((......-........(.....).....((------(...((((...........)))-)....)))))))))..))).)).))).. ( -21.50)
>DroAna_CAF1 118279 107 - 1
GUUGAAGCCUCCAC--AAC----UGGCGUCUGUCAAUAAAAAAAUACUCGUAAUAAAAA-GAG------CCAAUAGCAAAUAAUAUGCGGCAAAACUGCUGACAGACUGGCACGAGACGA
(((...(((.(((.--...----))).((((((((...........(((..........-)))------.................((((.....)))))))))))).)))....))).. ( -24.20)
>DroPer_CAF1 194720 106 - 1
GUUGAAGCCUCCACACAACUGUGUGGCGUCUGUCAAUAAAGAAAUAA---UAAAAGAAAAAAGCCAGAUCCAAUGGCAAAAAAAAU---------AUGCUGACAGACUGCCAAUAGAU--
((((..((..((((((....)))))).((((((((....(....)..---............((((.......)))).........---------....)))))))).))))))....-- ( -26.70)
>consensus
GUCGAAGCCUCCAC__AAC____GGGCGUCUGUCAAUAAA_AAAUACUCGUAAUACAAAAAAG______CCAAUGGCAAAUAAUAUGCGGC_AAACUGCUGACAGACUGGCAUUAGAUGU
(((...(((...............)))(((((((..........((....))......................((((..................))))))))))).)))......... (-13.14 = -13.41 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:40 2006